| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3448 |
|---|
| Symbol | |
|---|
| ID | 8227028 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 4220552 |
|---|
| End bp | 4224874 |
|---|
| Gene Length | 4323 bp |
|---|
| Protein Length | 1440 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 644931280 |
|---|
| Product | DNA-directed RNA polymerase subunit beta' |
|---|
| Protein accession | YP_003087823 |
|---|
| Protein GI | 255037202 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
|---|
| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0757798 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTTCA AAAAGAATAA AAAATTAAAC AGCGACTTTT CCAGAATGAC CATCAGTCTG
GCGTCACCGG AGTCTATTCT AGAAAGCTCC TTCGGTGAGG TAACCCAGCC TGAAACCATC
AACTACCGGA CCTACAAGCC GGAGATGGGC GGTCTGTTCT GCGAGCGCAT TTTCGGTCCT
GTAAAAGACT GGGAATGTCA CTGCGGTAAA TACAAGCGCA TTCGCTATAA AGGAATCATC
TGCGACCGTT GCGGTGTCGA GGTAACCGAG AAAAAGGTTC GCCGCGAGCG CATGGGCCAC
ATTGAACTCG TGGTTCCTGT TGCACATATC TGGTACTTCC GCAGCTTGCC GAACAAAATC
GGTTATCTGT TGGGACTTTC TACCAAGAAA CTCGACCAGA TCATTTATTA CGAACGGTAC
GCGGTTGTTC AGCCAGGTAT CAAAGAAGAG GACGGCGTTG GCTACCTCGA CTTCCTGACC
GAAGACGAAT ACCTCGATAT CGTTGACAAG CTCCCACGCG AGAACCAGTT GCTTCCTGAC
ACGGATCCCA ACAAATTCAT CGCGAAAATG GGTGCCGATG CATTGGAAAT GCTGTTGAGC
CGCATTAAGC TCGACGAACT TTCTTATGAA CTCCGTCACC AGGCTGCTAC CGACACTTCT
CAGCAACGTA AAGCGGAAGC TTTGAAGCGC TTGAAAGTGG TAGAAGCATT CCGTGATGCG
AATACCCGTA TCGAAAACCG CCCTGAATGG ATGGTGATCA AAATGGTACC GGTTATTCCA
CCAGAATTGC GTCCATTGGT ACCCCTGGAT GGTGGCCGTT TCGCGACTTC GGATTTGAAC
GACCTTTACC GTCGTGTGAT CATCCGTAAC AACCGTCTGA AACGCCTCAT CGAGATCAAG
GCACCTGAGG TGATCTTGCG TAACGAAAAG CGTATGTTGC AGGAAGCGGT TGACTCGCTT
TTCGACAACA GCCGGAAAGT AAATGCGGTA CGTTCGGAAG GTAACCGTGC TTTGAAATCA
CTTTCAGACA TGCTGAAAGG TAAGCAAGGC CGTTTCCGTC AGAACTTGCT CGGTAAGCGC
GTTGACTACT CTGGTCGTTC GGTTATCGTG GTAGGTCCTG AATTGAAACT GCACGAATGC
GGTCTGCCGA AAGACATGGC TGCCGAGCTT TTCAAGCCGT TCATCATCCG CAAGCTCATC
GAGCGTGGTA TTGTTAAAAC TGTAAAATCA GCGAAGAAGA TCGTAGACCG CAAGGACCCT
GTGATCTGGG ATATTCTCGA AAACGTACTG AAAGGTCACC CGGTATTGCT TAACCGTGCT
CCGACACTTC ACCGTTTGGG TATCCAGGCA TTCCAGCCTA AACTGATCGA AGGTAAGGCA
ATCCAGCTTC ACCCATTGGT GTGTACGGCA TTCAACGCCG ACTTTGACGG TGACCAGATG
GCGGTACACG TACCACTGGG TCAGGAAGCC GTTTTGGAAG CGTCTATGCT AATGCTTTCG
TCGCATAACA TTCTTAACCC AGCCAACGGT GCGCCGATTA CGGTACCATC GCAGGATATG
GTTTTGGGTC TGTATTATGT AACAAAAGGT CGCGTAAGCA CCGAGCAATA TCCGATCATC
GGAGAAGGCA AAATCTTCTA CGGTCCAGAT GAGGTGATCA TCGCGATCAA CGAAGGCAAA
TTGTCGAAAC ATGCGAATAT CAAATGCCGC GTTCGCGTTC GTAACGAGGA CGGTACATTT
GAAATTAAGC TGATCGACAC CGTTGCAGGT CGTATCCTGT TCAACCAGGC TGTTCCTGAG
GAGGTTGGTT ATATCAACGA ATTGTTGACC AAGAAAAAAC TTCAGCAGAT CATCGGTTTG
GTATTCAAAC AAGCTGGTGT GGCCCGTACG GCTCAATTCC TGGATGAAAT CAAAGAACTC
GGTTTCCAAA TGGCCTTCAA AGGCGGTTTG TCAATGGGAT TGGACGATGT AATGGTTCCA
AGTGAAAAAG AAAAACTCAT CGAGCAGGCG AAAGGCGATG TTGAAAACGT CTGGAACAAC
TACCTGATGG GTCTCATCAC CGAGAACGAA CGTTACAACC AGGTAATCGA TATCTGGACG
CGCGTTAACT CACGCATTAC AGAGACGTTG ATGAAGCAGC TGGAAACAGA CAAAGGCGGA
TTCAACTCAA TCTATATGAT GATGCACTCC GGAGCCCGCG GTTCCCGTGA GCAGATCCGT
CAGTTGGGTG GTATGAGGGG TCTTATGGCC AAACCTCAGA AAAACATCGC TGGTGGTGCC
GGTGAAATCA TCGAAAACCC GATTCTTTCT AATTTTAAAG AAGGTCTCGA CGTTTTGGAA
TACTTTATCT CTACCCACGG TGCGCGTAAA GGTTTGGCCG ATACCGCGTT GAAAACTGCG
GATGCGGGTT ACCTGACCCG TCGTTTGCAC GACGTTGCGC AAGACGTGGT AGTAGTGGAA
GAAGACTGCG GCTCGCTCCG TGGTATAGCA ATCTCTGCGT TGAAAGACAA TGAGGATATT
GTAGAACCAT TGTCAGAGCG TATCCTGGGT CGTGTGAGCG TTCATGACGT GTTCGATCCG
TTGAGCAACG AATTGATCCT GACTGCCGGC CAGGAAATCA CAGAGGAAAT TGCTGCTTAC
ATTGATGAAA CAGCGATCGA AACTGTGGAA ATCCGTTCGG TACTGACTTG CGAAACCCGC
GACGGTGTTT GCGCGAAATG CTACGGACGC AGCCTGGCGT CTGCCCAGAT GGTAAACATC
GGTGAGGCAG TAGGTGTAAT CGCTTCCCAG TCAATCGGTG AGCCGGGTAC ACAGCTGACA
CTCCGTACAT TCCACGTGGG TGGTACGGCT TCCAACATCT CTGTTGAAGC CAACATCAAA
GCGAAATTCG ACGGTTTGAT CCAGTTCGAA GATCTTCGTT TGGTACAATC TGTTAACTCA
GAAGGCGACG AAGTAACGGT AGTAATGGGT CGTTCAGGTG AGGTGAAAAT CGTTCACCCT
GAAACGAAAC AACTGCTGAT CTCGAACAAT GTACCTTACG GTGCGCATTT GCAGGTGAAA
GAAGGTGATA CCGTATTCAA AGGACAGGAA CTTTGTACCT GGGACCCTTA CCACGCGGTA
ATCCTTTCAG AATTCACTGG AACGGTTTCC TTCGACGCGA TCGAAGAAGG TATCACATTC
CGTGAAGAAT TTGACGAACA AACAGGCTTC CAGGAGTCGG TGATCATTGA AACGCGTGAC
AAAACCAAAA ACCCGGCGAT CGTGGTGAAA GGTAAGTCTA CATTGTTGAA AGATCAGACT
GAAAAGGGCT ATAACCTTCC TGTTGGAGCG CGTCTGGTTG TGAAGGCAGG TGCCGCTATC
AAAGCTGGTC AGCCGCTGGC GAAAATCCCA CGTGTCGTTG GTAAAACACG CGATATCACG
GGAGGTCTGC CACGTGTGAC CGAATTGTTC GAAGCACGTA ACCCGTCTAA CCCTGCGACG
GTTTCTGAAA TCGACGGTGT GGTATCTTAC GGCGGCGTGA AACGCGGTAA CCGTGAAATC
CATATCGAAT CGAAAGACGG AACACAACGC CGTTACATGG TGCCTTTGTC GAAACACATC
CTTGTTCAGG ATGGCGACTT CGTACGCGCC GGTGACCCGC TTTCCGATGG TGCTATCACC
CCTGCGGACA TCCTTTCTAT CAAAGGACCA ACCGCCGTTC AGGAGTACCT CGTGAACGAG
ATCCAGGAAG TATACCGTCT GCAAGGTGTG AAGATCAACG ATAAACACAT CGAGTGTATC
GTGCGCCAGA TGATGCAGAA AGTAGATATC CTGGACGCTG GTGACACCAA CTTCCTTGAA
ATGCAGGCAG TTGACCGCGT GGTATTCCGC GAGGAAAACG ACAAAATCCT GGATATGAAA
GTGGTTGAGG ACGCTGGTAG CTCCGAAACA TTGAAGCCTG GTATGATCGT TTCAGTTCGT
CGTTTGCGCG ATGAGAATTC AAGCCTGAAA CGTCGTGACC TGAAATTGGT TACTGCCCGT
GACGCGCAAG CTGCGGTAGC AAGACCAACC CTGATGGGTA TCACACAAGC TTCTTTGGGT
ACTGAAAGCT TTGTTTCCGC GGCTTCATTC CAGGAAACAA CCAAAGTATT GAGCGAAGCG
GCTGTTCGTG GAAAACGCGA CGAACTGAAA GGCTTGAAAG AGAACGTGAT CGTAGGTCAC
CTCATTCCGG CCGGTACAGG TATGCGTCAA TACGAAAACC TGATCGTTGG ATCGAAAGAA
GAATTCGATG CGCTGTCCGA TTCTCGCGAG AGACAATCGC GCAAGAAAAA GGAGTTGGCG
TAA
|
|---|
| Protein sequence | MSFKKNKKLN SDFSRMTISL ASPESILESS FGEVTQPETI NYRTYKPEMG GLFCERIFGP
VKDWECHCGK YKRIRYKGII CDRCGVEVTE KKVRRERMGH IELVVPVAHI WYFRSLPNKI
GYLLGLSTKK LDQIIYYERY AVVQPGIKEE DGVGYLDFLT EDEYLDIVDK LPRENQLLPD
TDPNKFIAKM GADALEMLLS RIKLDELSYE LRHQAATDTS QQRKAEALKR LKVVEAFRDA
NTRIENRPEW MVIKMVPVIP PELRPLVPLD GGRFATSDLN DLYRRVIIRN NRLKRLIEIK
APEVILRNEK RMLQEAVDSL FDNSRKVNAV RSEGNRALKS LSDMLKGKQG RFRQNLLGKR
VDYSGRSVIV VGPELKLHEC GLPKDMAAEL FKPFIIRKLI ERGIVKTVKS AKKIVDRKDP
VIWDILENVL KGHPVLLNRA PTLHRLGIQA FQPKLIEGKA IQLHPLVCTA FNADFDGDQM
AVHVPLGQEA VLEASMLMLS SHNILNPANG APITVPSQDM VLGLYYVTKG RVSTEQYPII
GEGKIFYGPD EVIIAINEGK LSKHANIKCR VRVRNEDGTF EIKLIDTVAG RILFNQAVPE
EVGYINELLT KKKLQQIIGL VFKQAGVART AQFLDEIKEL GFQMAFKGGL SMGLDDVMVP
SEKEKLIEQA KGDVENVWNN YLMGLITENE RYNQVIDIWT RVNSRITETL MKQLETDKGG
FNSIYMMMHS GARGSREQIR QLGGMRGLMA KPQKNIAGGA GEIIENPILS NFKEGLDVLE
YFISTHGARK GLADTALKTA DAGYLTRRLH DVAQDVVVVE EDCGSLRGIA ISALKDNEDI
VEPLSERILG RVSVHDVFDP LSNELILTAG QEITEEIAAY IDETAIETVE IRSVLTCETR
DGVCAKCYGR SLASAQMVNI GEAVGVIASQ SIGEPGTQLT LRTFHVGGTA SNISVEANIK
AKFDGLIQFE DLRLVQSVNS EGDEVTVVMG RSGEVKIVHP ETKQLLISNN VPYGAHLQVK
EGDTVFKGQE LCTWDPYHAV ILSEFTGTVS FDAIEEGITF REEFDEQTGF QESVIIETRD
KTKNPAIVVK GKSTLLKDQT EKGYNLPVGA RLVVKAGAAI KAGQPLAKIP RVVGKTRDIT
GGLPRVTELF EARNPSNPAT VSEIDGVVSY GGVKRGNREI HIESKDGTQR RYMVPLSKHI
LVQDGDFVRA GDPLSDGAIT PADILSIKGP TAVQEYLVNE IQEVYRLQGV KINDKHIECI
VRQMMQKVDI LDAGDTNFLE MQAVDRVVFR EENDKILDMK VVEDAGSSET LKPGMIVSVR
RLRDENSSLK RRDLKLVTAR DAQAAVARPT LMGITQASLG TESFVSAASF QETTKVLSEA
AVRGKRDELK GLKENVIVGH LIPAGTGMRQ YENLIVGSKE EFDALSDSRE RQSRKKKELA
|
|---|
| |