| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3436 |
|---|
| Symbol | |
|---|
| ID | 8227016 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 4200186 |
|---|
| End bp | 4201052 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644931268 |
|---|
| Product | Xylose isomerase domain protein TIM barrel |
|---|
| Protein accession | YP_003087811 |
|---|
| Protein GI | 255037190 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1082] Sugar phosphate isomerases/epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATACTG GATTCTGGAA AGCGTTGAAG ACGAAATCGG GCGCATTGGT GCTGTTGGCA
GTGGTGCTTG CTGGTGCAGG GCTTGTTGCA CTTACAGCGA ACAATCCGCG CTCCTGGAAG
CTGGGTGTCG CGCTGTACAC GTTTAATCCC TCGTCTTTTG AGGGACAACT GGACAAGGCC
GATAGCGCGG GCCTTAAATA TGTGGAGGGT TTCACATTCG GCAAGTCGAT TCCCGAATTG
AAAGATTCCG CCGTGATGAA ATTGTCGCCT TCGGGCATTA AAAAATTGAA AGCCTTCGTC
GAGAAAAAGG GCTTAAAAAT GGAGTCGATC TATCTTGTTG GCGGCAAGAC GATTCATGAC
TGGAAAAAGG AGTTCGAGAT TGCGAAGAAC TTTGGCGTAA AATACGTCAC TGCGGAGCCG
CCGGTGCGCC TTTGGGACAG CATCGACAGC CTGGCGGGCG TGTACGGCAT TAAATTGGCG
ATCCACAACC ATTGGAAAGG AACGAGCGCC TACTGGCATC CGGATTCGAC ATTGGCTGCA
TTGAAAGGGC ATCCGAATTT CGGCGTCTGC GCCGATCTGG GGCACATGCC CAAAAGCGGC
ATTAATCCCG TCGACGCATT GAAAAAGCTG AAAGGCCACA TTATCGCCAT CCATTTGAAA
GACATTGCGG CATATAATGA TCCCAAGCTG GTGGATGTAG TGGTGGGAAC GGGCGTGATC
GATTTTCCGG CGGTGTTCAG GGAGCTCGAA GCGCAGAAGT TTAACGGGCA CATCATCATC
GAGCGCGACC GACAAGAAAA GCCAAGCAAC CTGCCGTCGG TGATTCAAAC CGTTAAATAT
TACAAAACTA CGTTAGGTTT GAAATAA
|
|---|
| Protein sequence | MDTGFWKALK TKSGALVLLA VVLAGAGLVA LTANNPRSWK LGVALYTFNP SSFEGQLDKA
DSAGLKYVEG FTFGKSIPEL KDSAVMKLSP SGIKKLKAFV EKKGLKMESI YLVGGKTIHD
WKKEFEIAKN FGVKYVTAEP PVRLWDSIDS LAGVYGIKLA IHNHWKGTSA YWHPDSTLAA
LKGHPNFGVC ADLGHMPKSG INPVDALKKL KGHIIAIHLK DIAAYNDPKL VDVVVGTGVI
DFPAVFRELE AQKFNGHIII ERDRQEKPSN LPSVIQTVKY YKTTLGLK
|
|---|
| |