| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3425 |
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| Symbol | |
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| ID | 8227004 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 4186198 |
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| End bp | 4187226 |
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| Gene Length | 1029 bp |
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| Protein Length | 342 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 644931256 |
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| Product | uroporphyrinogen decarboxylase |
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| Protein accession | YP_003087800 |
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| Protein GI | 255037179 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
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| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.014949 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCTGA AAAATGACCT TTTGCTTCGG GCGGCGCGGG GAGAGAAGAC CGAACGCACG
CCTGTTTGGA TGATGCGCCA GGCCGGTCGC ATCCTTGCTG AATACCGGGC CGTTCGCGAG
AAGGCCGGAA GTTTTATCAA ATTGGCTACC ACACCTGAAA TGGCAGCAGA AGTGACCCTG
CAACCCGTAG ATTTGCTGGG CGTGGATGCT GCCATTATAT TTTCCGACAT CCTGGTGATC
CCCGAAGCCA TGGGACTGCC TTACGAGATG ATCGAACAAC GCGGACCTGT TTTCCCGAGC
ACCGTACATT CATTGGCCGA TCTCCAAAAA CTGCATATAG CCGAGCCGGA AACGGATCTC
AAATATGTGC TGGATGCCAT TAAAATTACA AAAGAAGGCC TCGCAGGCCG CGTGCCGCTC
ATCGGTTTTG CTGGCGCGCC GTTCACGATT TTCTGTTACA TGACGGAAGG CAAAGGCTCC
AAAACTTTTT CGGTAGCAAA AAAGCATTTG TACGCCGAAC CTGAATTTTC GCATACATTA
TTACAACAAA TCACCGACAG CACGATCGCT TACCTGAAAG CGCAGATCGC CGCCGGTGCG
GATATTGTCC AGCTTTTCGA TTCCTGGGCG GGCATTCTCT CGCCGGAGCA ATATCGCGTT
TTCTCGCTGC CTTATATCAA ACAGATCTGC GACGCGATTA CCGAAGTGCC GGTGACTGTT
TTTGCCAAAG GCGCATTCTT TGCCAGGAAG GAAATCGGGG AGCTGAGCTG CTCGGTGGTA
GGCCTCGACT GGAATATGGA CATTTCCGAA TCCCGCGCGC TGGTTCCCAA CAAAACTTTG
CAGGGCAACC TCGATCCGTG CGTGCTTTAC GCTTCTTACG ATCAGATCCG GAAGGAAGTG
AAGAATATGG TCGATCAGTT TGGGACGCAG CGCTACATTG CCAACCTCGG CCACGGCGTA
TACCCCGACA CCGATCCCGA CAAGGTAAGG TGCTTCATCG AGGCAGTGAA AGAGTATTCT
TCCCTTTAA
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| Protein sequence | MNLKNDLLLR AARGEKTERT PVWMMRQAGR ILAEYRAVRE KAGSFIKLAT TPEMAAEVTL
QPVDLLGVDA AIIFSDILVI PEAMGLPYEM IEQRGPVFPS TVHSLADLQK LHIAEPETDL
KYVLDAIKIT KEGLAGRVPL IGFAGAPFTI FCYMTEGKGS KTFSVAKKHL YAEPEFSHTL
LQQITDSTIA YLKAQIAAGA DIVQLFDSWA GILSPEQYRV FSLPYIKQIC DAITEVPVTV
FAKGAFFARK EIGELSCSVV GLDWNMDISE SRALVPNKTL QGNLDPCVLY ASYDQIRKEV
KNMVDQFGTQ RYIANLGHGV YPDTDPDKVR CFIEAVKEYS SL
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