Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_3382 |
Symbol | |
ID | 8226961 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | + |
Start bp | 4138414 |
End bp | 4140228 |
Gene Length | 1815 bp |
Protein Length | 604 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644931213 |
Product | TonB family protein |
Protein accession | YP_003087757 |
Protein GI | 255037136 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAACGC TCCTTTATTT GTTGAAAGTC AATTTGTACT GGGGCGCATT TTACGCCTGC TACTGGCTCC TGCTCCGCAA GCACACTTTC TTTCACTGGA ACCGTTTCTA CCTGCTGGGT TCGTTACTGA TCGCCTTCGC ATTGCCTGCA TTACGCTTCT CAGCACCGGT AACGACCATT TACGTACCCG AAACCGTCTA CCAGAAAGCG ACTATCTCAG TAGCCGTGGT GGCCGGCCAT GCTCCGCAAA CAGGTAGCGG TGAATGGCTG TGGCTGATCG CAGCTGCGTA TCTTGCCGGC GTGGTCGTGC TGGGATGGCA ATTCCTTTCC GGTTTGAGGC GGTTGATCCG GATAGCGCGC CAAAGTGAAA CAATCGGAAT GGGCCAGTAC ACGCTCGTAA TGCTGCCGGA ATGCAATGTT AGGCACGGCG GAAGCTCTTT TTCGTTTTTC CACTGGCTAT TCCTGAGCGC ACACGACTAC CGGCACAACC CCGACGCGGT GATCCGCCAT GAATGCGAGC ACATCCGGCA ATGGCACACG GCGGACATAC TGGTGGTCGA ACTGCTCAAA ATCGGTTTCT GGTTCAATCC GGTGCTGTGG CTTTACAAAC GCTGCATTCA AACCGTGCAC GAGTACCTCG CCGACCAGCC GGTTCCCGAC CGGCACGGTT ACGCGTCGTT TCTCGTGGCT TATGCGCTCC GCAGCCCGGA TATCGCGGTG GCTAATCATT TTTTCAACTC GTCGATGCTC AAAAACCGGA TTGATATGAT CTACAAAAAG CGCAGTTCCC GTTGGCTGCT GGCCAAATAT CTGCTAATCC TGCCGGTGCT CATGTGCTCT ATGGCCATTT CAGCTTCCCG GTCGCCGTTG CAAGCGATCC AGCGGCTGGA TGCCGCTATC GGACAGAACA TCCGCGTAAA GGGTAACCTC ACCAATGAAC AGAAAGAGCC TGTTTCGGAT GCGATAGTGA TCGTAGCCGG AACCACACGC GGCACCACTA CCGACCGGAA CGGCTGGTTT GAGCTGGACA ATGTGCCGAC CGGCGCCAAA CTGGTCATCA CGCATGTTGC CTATCAAGCG GTTGAAGTGA CGGTTTCTGA TAATCAAACC GAGCTCATGC TGGTTATGAA AAAGGCGGTG AATCAAATCA CCGGCCCGGT GATCGTCGGG AAACCGGCAA CCGCCACAGC GCCGGTAACT GCCTCCGCGC CCCCTTCGAC GGTGGATCGC AATATGAAAG TGGTAGAGCA GCAACCACAG TTTCCCGGCG GAAGGGAAGC CCTCATGCAA TATTTAATGC AAAATCTGGA ATATCCTGAA ATTGCCCGGC AGATCAGACT GGAAGCTATC GCGCTGGTTT CATTCACGGT GGATAAAAAC GGCGAAATCC GCAATGCCAA AAGCCTGAAA AACATCGGCT ATGGCATCGA CAAGGAAGCG TTGCGGGTGG TGAACGATAT GCCGAAGTGG AATCCGGCGG TGCAAAACGG TAAGCCGGTT GAAATGGAAT ACACCCTTGA AGTGAATTTC AAAATGGAGG ACAAAAGTGA GGATAAGCGC CAGGGGTTCA TGAATTTCAG AGACATTACT CCCGCCTCTT CGATGGAAAA AATAGGTAAG CTGTTCGGTA ATCCATTAGA CATTCTGGCA TCCGGCAAAG TGCCCGAGGT GAGGTATGGA GCAGTGAATT ACAAGACTTC AAGCAATGCG GCTACCGAGT ACATGTCGAA TGACAATGGG ACATACAGGT ATCTCAACTA TGGCCTCACA TCCCGGCGAT ATGCCGCGCC AGTCTTGAAA TACAGGGCAA AATAG
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Protein sequence | METLLYLLKV NLYWGAFYAC YWLLLRKHTF FHWNRFYLLG SLLIAFALPA LRFSAPVTTI YVPETVYQKA TISVAVVAGH APQTGSGEWL WLIAAAYLAG VVVLGWQFLS GLRRLIRIAR QSETIGMGQY TLVMLPECNV RHGGSSFSFF HWLFLSAHDY RHNPDAVIRH ECEHIRQWHT ADILVVELLK IGFWFNPVLW LYKRCIQTVH EYLADQPVPD RHGYASFLVA YALRSPDIAV ANHFFNSSML KNRIDMIYKK RSSRWLLAKY LLILPVLMCS MAISASRSPL QAIQRLDAAI GQNIRVKGNL TNEQKEPVSD AIVIVAGTTR GTTTDRNGWF ELDNVPTGAK LVITHVAYQA VEVTVSDNQT ELMLVMKKAV NQITGPVIVG KPATATAPVT ASAPPSTVDR NMKVVEQQPQ FPGGREALMQ YLMQNLEYPE IARQIRLEAI ALVSFTVDKN GEIRNAKSLK NIGYGIDKEA LRVVNDMPKW NPAVQNGKPV EMEYTLEVNF KMEDKSEDKR QGFMNFRDIT PASSMEKIGK LFGNPLDILA SGKVPEVRYG AVNYKTSSNA ATEYMSNDNG TYRYLNYGLT SRRYAAPVLK YRAK
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