Gene Dfer_3362 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_3362 
Symbol 
ID8226941 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp4115208 
End bp4117469 
Gene Length2262 bp 
Protein Length753 aa 
Translation table11 
GC content54% 
IMG OID644931194 
Productcapsular exopolysaccharide family 
Protein accessionYP_003087738 
Protein GI255037117 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis 
TIGRFAM ID[TIGR01007] capsular exopolysaccharide family 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGACAA CAAAAGGCCC CACCAACGAC TACCCGCCAT TCCAGGACTG GGCGAACCAT 
CCATTATGGA AAGCCATTCA ATTCCGCTGG TACTGGCTGG TCGTCTCGCC CATTGTGTCC
CTCTTGCTGG GGACGGCTTT CCTGCGTTAC AAAACGCCGC GCTACCAAGT CACTGCTTCC
CTCATGGTCC GCGACGATTC CCGGGGAAGC GATTTGCACG AAACGGCCCT CCTCGAAGAG
CTCGGGCTGC CCGATGCCGC GGGGAGTGTG GAAAATGAAA TTGAAATACT CAAAAGCCGC
ACATTGCTCG GTCAGGTGGT CGACGATCTG CATCTCACGA TCCAATACTT CGCCTCCGGT
CTCCTCAAAA CCACCGAGCT TTACGAAAAG GCCCCCTATC GCGTAAGGTT TATTCAAAAG
CAGCCTCCAC GTCCTGAAAC ATATCATATT GTAAGGCAAG CGGGTGATTT TTACATAATA
GAAATTTCCG GCAGCCGCTT TAGAGGGAGG TTTAGCAGCC CATTGGCGCT GCCCCAAGGC
GTAGCTGTGA TTGTGGACAC TACCCGTTTC AAACCTTCTG CTCTTTACCA GTATTCTTTC
AGGACACTTG CAAAAGAGAC GGTCGTCGAT CACTACGCCC GCACGCTCTC CATTCAGGCG
CCGAACAAAA TCGCCAGCAT GGTTAACCTT TCCATTCAGG ACGTGCTAGC CCGAAAAGGC
GAAGCCATAT TGAAGCAACT GATTGTACGG TATCAAAAGG CAAGTATCGA CGAGAAAAAC
AAGGTAGCGG ACAATACTAT TGCTTTTATT AATCACAATC TGGAAAGGGT TTCGGCCGAA
CTGGCCAGCG TTGAAACGAA CATCGAAGGC CTGCGTAAGC AGCATAAGCT GATCGACATC
GCAGAAGACA CCCGGCAGGC CCTCCAAAAG CTTGCTGCCA ACACGTCGGA AGAAAGGGAA
TGGGCTACCC ATTTGAAAAT CGTTCAGTTG CTGGAAGATC ATTTACGCAA GAGCCCATCG
ACGGCCATCC CTTCCCTCCT CTATCCGCAG GAAAGCAATT TCTCCGCTCT CGCATCCACC
TTCAATGAAA TGCAGCTGAA CCGCGTGAAA GCGCTCACCA CCCTCGCGCC CAACCATCCT
GCCGTTACCA CGCTCGACAG CCAGATTGCA GCCGCCAGGG GCAATCTTTT CGACGCGATC
CACCAGCAAA AGCAGGAACT GGCGCTCCGC CTCGCCTCCG TTCACGCCTA TGGCAAAGGC
TTCCATGCCG AAATCATTCA AATTCCGACG CATCAGCGGG CGCTTTTAAC CCACTCGCGA
GAGCAGGGCA TTCAGCAGGA GTTATACCTG TTTTTACTCA AAAAAAGAAT GGAAACGGCT
ATTTCCCGTT CTGCAAACAT CGCCAACGCC CGGGTAATCG ACCCGCCCAA AGCAGGCATC
GCGCCCACAT TTCCCAACCC GGCGCTGACC ATTCTCGTGG CTTTGTTCGC CGGCATTCTT
GCACCCATAT CGACGCTTTA CGTTGCCCGC ATACTGAACA ACAAAGTCAC GTCCAAAGAG
GACATCCTGC TGCATTGCAA TGCGGTGATC ATCGGCGAAA TCAGTCAGCA GAAACCAAAT
TCCCGTTTCA CAGTTGCCGA TAGCCGGAGC CTGGTCAGCG AGCAATTCCG CTCGTTGCGG
ACAAACATCC GGTTCATTTC CGGCGCGCGG CCCCACACCG TGATCCTGCT TACATCCGCA
ATGGGTGGAG AAGGCAAGTC GTTCGTCGCC GCGCACCTGG CGCATTCGCT CGCGCTCGCG
AGCAAAAGTG TGTTGCTGGT TGACCTCGAT CTTCGGAAAC CATCGCTCGC CCAACTTCTG
AAATTGAAAA ACGAGGGCAT TACCGAGTCG ATTGCTTCGA GTTCCAAACC TGAAATTCAA
GCCGCCGGTA GGGAGCATTC CTTCGATTTC ATTGCCGCAG GCGCGCCTTG CCCCGGCGCC
GGTGAAATCG TGCTTTCTTC CCATTTGACC GGGTTGATTT CGTCGCTCAG ATGTCGATAC
GACTATATTC TGCTGGACAG CCCGCCCATA GGCCTGGTGG CCGACGCCGG TGTGTTGGGT
TCCCACGCCG ATATGACGCT GTACATCGTG CGGCAGCACT TCACATTTCT GCACCAGCTA
GCCGACATGA AAAGGCTGCA CGAGCAGTCA CTTTTGCCGG ATCTGCACGT GATCCTGAAC
GGTACGCGCG ACCTGCACCG CTATCAGTAC AATTACTATT AA
 
Protein sequence
MLTTKGPTND YPPFQDWANH PLWKAIQFRW YWLVVSPIVS LLLGTAFLRY KTPRYQVTAS 
LMVRDDSRGS DLHETALLEE LGLPDAAGSV ENEIEILKSR TLLGQVVDDL HLTIQYFASG
LLKTTELYEK APYRVRFIQK QPPRPETYHI VRQAGDFYII EISGSRFRGR FSSPLALPQG
VAVIVDTTRF KPSALYQYSF RTLAKETVVD HYARTLSIQA PNKIASMVNL SIQDVLARKG
EAILKQLIVR YQKASIDEKN KVADNTIAFI NHNLERVSAE LASVETNIEG LRKQHKLIDI
AEDTRQALQK LAANTSEERE WATHLKIVQL LEDHLRKSPS TAIPSLLYPQ ESNFSALAST
FNEMQLNRVK ALTTLAPNHP AVTTLDSQIA AARGNLFDAI HQQKQELALR LASVHAYGKG
FHAEIIQIPT HQRALLTHSR EQGIQQELYL FLLKKRMETA ISRSANIANA RVIDPPKAGI
APTFPNPALT ILVALFAGIL APISTLYVAR ILNNKVTSKE DILLHCNAVI IGEISQQKPN
SRFTVADSRS LVSEQFRSLR TNIRFISGAR PHTVILLTSA MGGEGKSFVA AHLAHSLALA
SKSVLLVDLD LRKPSLAQLL KLKNEGITES IASSSKPEIQ AAGREHSFDF IAAGAPCPGA
GEIVLSSHLT GLISSLRCRY DYILLDSPPI GLVADAGVLG SHADMTLYIV RQHFTFLHQL
ADMKRLHEQS LLPDLHVILN GTRDLHRYQY NYY