Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_3362 |
Symbol | |
ID | 8226941 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | + |
Start bp | 4115208 |
End bp | 4117469 |
Gene Length | 2262 bp |
Protein Length | 753 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 644931194 |
Product | capsular exopolysaccharide family |
Protein accession | YP_003087738 |
Protein GI | 255037117 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
TIGRFAM ID | [TIGR01007] capsular exopolysaccharide family |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGACAA CAAAAGGCCC CACCAACGAC TACCCGCCAT TCCAGGACTG GGCGAACCAT CCATTATGGA AAGCCATTCA ATTCCGCTGG TACTGGCTGG TCGTCTCGCC CATTGTGTCC CTCTTGCTGG GGACGGCTTT CCTGCGTTAC AAAACGCCGC GCTACCAAGT CACTGCTTCC CTCATGGTCC GCGACGATTC CCGGGGAAGC GATTTGCACG AAACGGCCCT CCTCGAAGAG CTCGGGCTGC CCGATGCCGC GGGGAGTGTG GAAAATGAAA TTGAAATACT CAAAAGCCGC ACATTGCTCG GTCAGGTGGT CGACGATCTG CATCTCACGA TCCAATACTT CGCCTCCGGT CTCCTCAAAA CCACCGAGCT TTACGAAAAG GCCCCCTATC GCGTAAGGTT TATTCAAAAG CAGCCTCCAC GTCCTGAAAC ATATCATATT GTAAGGCAAG CGGGTGATTT TTACATAATA GAAATTTCCG GCAGCCGCTT TAGAGGGAGG TTTAGCAGCC CATTGGCGCT GCCCCAAGGC GTAGCTGTGA TTGTGGACAC TACCCGTTTC AAACCTTCTG CTCTTTACCA GTATTCTTTC AGGACACTTG CAAAAGAGAC GGTCGTCGAT CACTACGCCC GCACGCTCTC CATTCAGGCG CCGAACAAAA TCGCCAGCAT GGTTAACCTT TCCATTCAGG ACGTGCTAGC CCGAAAAGGC GAAGCCATAT TGAAGCAACT GATTGTACGG TATCAAAAGG CAAGTATCGA CGAGAAAAAC AAGGTAGCGG ACAATACTAT TGCTTTTATT AATCACAATC TGGAAAGGGT TTCGGCCGAA CTGGCCAGCG TTGAAACGAA CATCGAAGGC CTGCGTAAGC AGCATAAGCT GATCGACATC GCAGAAGACA CCCGGCAGGC CCTCCAAAAG CTTGCTGCCA ACACGTCGGA AGAAAGGGAA TGGGCTACCC ATTTGAAAAT CGTTCAGTTG CTGGAAGATC ATTTACGCAA GAGCCCATCG ACGGCCATCC CTTCCCTCCT CTATCCGCAG GAAAGCAATT TCTCCGCTCT CGCATCCACC TTCAATGAAA TGCAGCTGAA CCGCGTGAAA GCGCTCACCA CCCTCGCGCC CAACCATCCT GCCGTTACCA CGCTCGACAG CCAGATTGCA GCCGCCAGGG GCAATCTTTT CGACGCGATC CACCAGCAAA AGCAGGAACT GGCGCTCCGC CTCGCCTCCG TTCACGCCTA TGGCAAAGGC TTCCATGCCG AAATCATTCA AATTCCGACG CATCAGCGGG CGCTTTTAAC CCACTCGCGA GAGCAGGGCA TTCAGCAGGA GTTATACCTG TTTTTACTCA AAAAAAGAAT GGAAACGGCT ATTTCCCGTT CTGCAAACAT CGCCAACGCC CGGGTAATCG ACCCGCCCAA AGCAGGCATC GCGCCCACAT TTCCCAACCC GGCGCTGACC ATTCTCGTGG CTTTGTTCGC CGGCATTCTT GCACCCATAT CGACGCTTTA CGTTGCCCGC ATACTGAACA ACAAAGTCAC GTCCAAAGAG GACATCCTGC TGCATTGCAA TGCGGTGATC ATCGGCGAAA TCAGTCAGCA GAAACCAAAT TCCCGTTTCA CAGTTGCCGA TAGCCGGAGC CTGGTCAGCG AGCAATTCCG CTCGTTGCGG ACAAACATCC GGTTCATTTC CGGCGCGCGG CCCCACACCG TGATCCTGCT TACATCCGCA ATGGGTGGAG AAGGCAAGTC GTTCGTCGCC GCGCACCTGG CGCATTCGCT CGCGCTCGCG AGCAAAAGTG TGTTGCTGGT TGACCTCGAT CTTCGGAAAC CATCGCTCGC CCAACTTCTG AAATTGAAAA ACGAGGGCAT TACCGAGTCG ATTGCTTCGA GTTCCAAACC TGAAATTCAA GCCGCCGGTA GGGAGCATTC CTTCGATTTC ATTGCCGCAG GCGCGCCTTG CCCCGGCGCC GGTGAAATCG TGCTTTCTTC CCATTTGACC GGGTTGATTT CGTCGCTCAG ATGTCGATAC GACTATATTC TGCTGGACAG CCCGCCCATA GGCCTGGTGG CCGACGCCGG TGTGTTGGGT TCCCACGCCG ATATGACGCT GTACATCGTG CGGCAGCACT TCACATTTCT GCACCAGCTA GCCGACATGA AAAGGCTGCA CGAGCAGTCA CTTTTGCCGG ATCTGCACGT GATCCTGAAC GGTACGCGCG ACCTGCACCG CTATCAGTAC AATTACTATT AA
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Protein sequence | MLTTKGPTND YPPFQDWANH PLWKAIQFRW YWLVVSPIVS LLLGTAFLRY KTPRYQVTAS LMVRDDSRGS DLHETALLEE LGLPDAAGSV ENEIEILKSR TLLGQVVDDL HLTIQYFASG LLKTTELYEK APYRVRFIQK QPPRPETYHI VRQAGDFYII EISGSRFRGR FSSPLALPQG VAVIVDTTRF KPSALYQYSF RTLAKETVVD HYARTLSIQA PNKIASMVNL SIQDVLARKG EAILKQLIVR YQKASIDEKN KVADNTIAFI NHNLERVSAE LASVETNIEG LRKQHKLIDI AEDTRQALQK LAANTSEERE WATHLKIVQL LEDHLRKSPS TAIPSLLYPQ ESNFSALAST FNEMQLNRVK ALTTLAPNHP AVTTLDSQIA AARGNLFDAI HQQKQELALR LASVHAYGKG FHAEIIQIPT HQRALLTHSR EQGIQQELYL FLLKKRMETA ISRSANIANA RVIDPPKAGI APTFPNPALT ILVALFAGIL APISTLYVAR ILNNKVTSKE DILLHCNAVI IGEISQQKPN SRFTVADSRS LVSEQFRSLR TNIRFISGAR PHTVILLTSA MGGEGKSFVA AHLAHSLALA SKSVLLVDLD LRKPSLAQLL KLKNEGITES IASSSKPEIQ AAGREHSFDF IAAGAPCPGA GEIVLSSHLT GLISSLRCRY DYILLDSPPI GLVADAGVLG SHADMTLYIV RQHFTFLHQL ADMKRLHEQS LLPDLHVILN GTRDLHRYQY NYY
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