| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3278 |
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| Symbol | |
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| ID | 8226856 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 4016806 |
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| End bp | 4019727 |
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| Gene Length | 2922 bp |
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| Protein Length | 973 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644931110 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_003087655 |
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| Protein GI | 255037034 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTTG TTTTACAACT AACATTCCTG GCTGTGTTCT CAGGACTCAC ATCGGAGGCA
TTCGCCCAGT TTCCGGGCGG TGGCGGCGGT GGTTCCAGAG GCGGTGGAGG CGATTTTCGC
GGAGGCGGCA ACAGGCCGCA ACGGCAGACG GTTATTCCGG GAACGGCAGA AGACACCCCC
AAAGGCAACG GTAAAATCAC GGGCGTGCTC GTGGATTCGA CTTCTAAAAA ACCGGTGGAA
TTCGCCGCAT TGTCGCTCGT AGATACGAAA ACGAATAGTC CGATTGATGG TACTACTACC
GACGAAAAAG GCGAGTTTAC CCTCACAAAA GTGGCTTCGG GCAACTTCAA GATCCTGATT
TCCTTTATCG GCTATAAAAC AAAAACGATC AGCAACGTCA AAATCGACCG CAGGACGGAA
CTGAACCTGG GCACTGTTGT ACTGGTGCCC GACGTGGTGC AGCTTAACGA AGTGGAAGTG
GTGGGGATGG CGCAAATGGT GGAGGAGAAA GTCGACAGGC TGGTGTACAA TGCTGAAAAG
GACATTACCA GCCGGGGCGG TGACGCTTCC GACGTGATGA AAAAGGTGCC GATGCTCACC
GTGGACCTCG ATGGTAACGT ATCGCTCCGC GGAAGTTCCA ACGTACGCGT GCTGATCAAC
AACAAGCCTT CGACGATCAT CGCTACCAGC GTGGCCGATG CATTGAAACA GATCCCGGCA
GATATGATCA AATCCGTGGA GGTCATCACG TCGCCTTCCG CACGCTATGA TGCCGAAGGT
TCTGCGGGTA TTATCAATAT CATCACCAAA AAGAGTACCA TTCAAGGCGG TACGCTTAAC
CTCGACACGG GTATCGGTAA CCGCGGCTCC AACCTGGGCT TGCGCGGTAA CTACCGGATC
GGCAAAATGG GTTTCAGTTT GGGCGGTTTC GGCCGGTTCA ATTATAATAT GCCGGGTAAA
TCGGAGAATT TGCAGGTTGG CAAGCTGAGC GATTTTACGG TGCGCCAAAT GAGCGATTCC
AAAAATAAAA TGGCATTTGG CTCCTACAAC TTCGGGTGGG ACTGGGAAAT CGATTCCAAA
ACGTCATTGT CGGCCGGGGT GCGCTATGGC ATGCGGAACA ACAAGGTGGA CCAGGAGCTC
TACACCTACA ATACCGTAAA CGATACCACT AGAACCAGCT TCCGCGACGT GAACAGCAAG
GACCTTTCCG GCACCTGGGA CGTGAATGTC GATTATATGA AAACCCTTGC CAAGCCTGGC
CAGGAGCTGA GCATTTCGAC GCAATACAGC CGTAACAACC GTACGAACGA CTTCGACGCC
GACATTTTCT CGCTGAACAA TACGCAGCTG AGAGAATTGA TTGGCCAGCA AGGCAACAAC
AATAGCAGCC ACAACCAGGA AAGCACCGTT CAGGTCGATT ACCAGACACC GATCAAGGAA
AACCAGATGC TGGAACTCGG TGGAAAGGGT ATTTTCCGTC AGGTAGTGAG TAATTTTGAT
TATTACAACA CGGTGGACAC ACCACAGCCG GCCAGCAACC TGAACTATGA TCAGAATGTA
GCAGCGGGAT ATTTGTCCTA CACATTCACT ACCAAAAGCA GATTTACCGT AAAAGCGGGC
ACGCGCTACG AATACACGAG CATCGATGCG CAGCAGGGCG AAGCCGGAGA CCTGAGATTG
CCGGCATACG GTAACCTGGT ACCGAGCATT AACCTTTCGC AGACTTTCGG GAAAGGGCAG
ACCGTGAAGC TGGCCTATAA CCGCCGCCTC CAACGCCCGG GCATTCAGTT CCTGAACCCG
AACCGGAATG CGGCCAATCC GCAGAACATC ACCGAGGGTA ACCCGAACCT GAAACCGGAA
CTGACCGACC AGGTGGAGCT GGGGACAAGC TTCTTCAAAA ACTCGATGTA CATTAATGTC
TCGACTTTCG CGCGCTTCAC CAACAGCTCC ATCGAAAGCA TCCGTACCAC CGACGAAAAC
GGTGTGATCA CGACGACTTA TGGAAACATC GGTTCGAAGA AGAACTATGG TGCCAATATT
TTCGGTAATG TAACTTTCTT CAAAAGATGG CAGCTCGGCG GCGGGTTCGA TTTCTACTAC
GCCGACCTTT CCAACAACAG TCCTGATCTC GCATTGCAAA ACTCCAACAG CGGTTTCGTG
TTAAGCGGCC GTTTCCGCAC CAGTTTGAAC ATCAAAAACG GCTGGGGCTT GCAGGCAGGC
GGCTTCATGC GCGGCCGCGA CGTGCAGCTG CAAGGTACGC AGGCCGGTTT CCGCATGTAC
GACTTCGGTA TCCGCAAGGA ATTTGCCAAC AAGCGTGGCA GCATCGGTTT TGGAATGGAA
AACTTCCTCG CGCCTTCGTT TAAAATGAAG ACCAGCCTGG AATCCAGTAC ATTTACCCAA
AACAATACCA ACTACCTGTA CAACCGCGGT TTCCGGGTGA ACTTCTCTTA TCGTTTCGGT
AAAATGACGT TCGTGGAGCA GAAACCGCGC AGAAGAAAAT CAGTGAATAA CGACGACCAG
AAATCCGACG GCGGCGGTAA TATGGACGCT GGCGGCGGAG GAATGCAGGG CGGCGGACAG
GCGCCGGCAG CTGCACCGGC AGCAGGCGGT CGTGGAGCAG GTGCTCCCGG TGCGGGACGT
CCGCAAGGTG CAAGACCAGC CGCAGACAGC ACGGCGCGCC CGGTTCAGCA GGGTAACTCT
CCGGGCCTTC CCGGACAAGG ACAACCTGTA ATGCGTCAGG ATTCGATCAA ACGCGACTCT
ACGCAAGTAA GGCCGGATTC CACCACAATT CGTCCAGATA GCAGCACCGT CCGCCCGGAC
AGCACGGCAC GTCCGGCATT GCCCGCAACG CCAATCAAGC AGGATTCGAC CGCGTTGCCA
GTGAAACCAG CTACGCCGGC GGATTCGACG AAGAAGGAAT AA
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| Protein sequence | MKLVLQLTFL AVFSGLTSEA FAQFPGGGGG GSRGGGGDFR GGGNRPQRQT VIPGTAEDTP
KGNGKITGVL VDSTSKKPVE FAALSLVDTK TNSPIDGTTT DEKGEFTLTK VASGNFKILI
SFIGYKTKTI SNVKIDRRTE LNLGTVVLVP DVVQLNEVEV VGMAQMVEEK VDRLVYNAEK
DITSRGGDAS DVMKKVPMLT VDLDGNVSLR GSSNVRVLIN NKPSTIIATS VADALKQIPA
DMIKSVEVIT SPSARYDAEG SAGIINIITK KSTIQGGTLN LDTGIGNRGS NLGLRGNYRI
GKMGFSLGGF GRFNYNMPGK SENLQVGKLS DFTVRQMSDS KNKMAFGSYN FGWDWEIDSK
TSLSAGVRYG MRNNKVDQEL YTYNTVNDTT RTSFRDVNSK DLSGTWDVNV DYMKTLAKPG
QELSISTQYS RNNRTNDFDA DIFSLNNTQL RELIGQQGNN NSSHNQESTV QVDYQTPIKE
NQMLELGGKG IFRQVVSNFD YYNTVDTPQP ASNLNYDQNV AAGYLSYTFT TKSRFTVKAG
TRYEYTSIDA QQGEAGDLRL PAYGNLVPSI NLSQTFGKGQ TVKLAYNRRL QRPGIQFLNP
NRNAANPQNI TEGNPNLKPE LTDQVELGTS FFKNSMYINV STFARFTNSS IESIRTTDEN
GVITTTYGNI GSKKNYGANI FGNVTFFKRW QLGGGFDFYY ADLSNNSPDL ALQNSNSGFV
LSGRFRTSLN IKNGWGLQAG GFMRGRDVQL QGTQAGFRMY DFGIRKEFAN KRGSIGFGME
NFLAPSFKMK TSLESSTFTQ NNTNYLYNRG FRVNFSYRFG KMTFVEQKPR RRKSVNNDDQ
KSDGGGNMDA GGGGMQGGGQ APAAAPAAGG RGAGAPGAGR PQGARPAADS TARPVQQGNS
PGLPGQGQPV MRQDSIKRDS TQVRPDSTTI RPDSSTVRPD STARPALPAT PIKQDSTALP
VKPATPADST KKE
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