| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3233 |
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| Symbol | |
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| ID | 8226808 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 3961292 |
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| End bp | 3964015 |
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| Gene Length | 2724 bp |
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| Protein Length | 907 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644931062 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_003087610 |
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| Protein GI | 255036989 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00000192727 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCTCA ATTATACTTC GCCCCAAACG GGCATTAAAA ACTCCTTCGC TCCGCTCCGA
AAATGCATGG CTGCCGTGTT ATGTGCTACC GCATTGCTCA ATGCCGATAG CTTGCACGCC
CAAGCACCCG TACTGGCAAA AGCCGTGAAC CTGAAATTGC ACGACGTCCG CCTCTCCGAC
GCGCTGGCGC AGATCGGCGA CCAGACGGGC ACTTCCATTT CATACAGCAG CACGCAGCTG
GATGTTGCCA AAAAAGTGAA TGCCAATCTT GCCAATATTC CCGTAAAAGA CGCCCTGCAC
CGCGTGGTAG GGTCGTCTTT GAAAGAGTTG CACGTGCAGG AAAACGTGAT CACGATCGAA
GCGAACGAAG GCCGCGGCGC ATTGCGCGGT ACATTGAAGA CGTCCGACGG GAAACCGGCC
GAGTTCGTGA ACATTACCGT GAAAGGCACG GGCAAAGGCG CCCAGAGCGA CGCAAACGGC
CAGTTCCTGA TCCGCAACAT TCCCGCGGGC CAGCACACGG TCGTGATTCA GCTGCTTGGC
TACGAGCCGA TTGAGCGCCC CGTGACCATC GAGGCCGACC AGACCGTCGC ATTTGAACCG
ATATTCCTCA ATGAAGACAG CAAGGCGTTG CAGGAAGTGG TGATCAGCGG GGATATCAAT
AAGTTTTCCA AAAAGGAAAG TGAATATGTG GCTAAAATGC CGGTGAGCAA CATGGAAAAC
CCGCAGGTTT ACAGCGCATT ATCCAAGACG CTTTTCACCG AACAGCTTAT TACCGACTTC
TCCAACATCG TCAAAAATGC GCCGGGCGTG TACAAAATCC AGGCGAACCG CGGTATCAAT
TCCGACGGGG CGACCTTCTA CGCCTTGCGC GGTTTCCGCA CCGAAATGGC CATGGTGGAC
GGCTTGCCCG TGCAAACCAA CGGCGAGTTT GACCCGATTA ATGTGGAAAA AGTGGAAGTA
ATCAAAGGGC CTTCGGCGAC GCTCTTCGGC AGCGCGGTGA CGTCTTTTGG AGGATTGATG
AATATTGTCA CTAAAAAACC GGTTGAAATA GCGGGCGGCG AGATTGGGTA CACAACCGGC
AGCTTCGGGC TCAACCGCCT GACGGCCGAC ATTTATTCTC CTATTAATGC TTCCAAGAAT
CTTTTGTTGA GGGTTAATGC GGCTTATCAA TACCAGGGCA GCTTTCAGGA TGCCGGTTTC
CGCCGCAGTC TGGTGATTGC TCCTTCATTG GAGTACCGTG TGAATGAGCG GATGACCGTG
CTGTTTAATG CGGGCATTTA CCAGGGTGAA ATGACGAGCC CTTCGGCCAT TTTCCTCAAC
CGCACACGGC AGTTTGTGGC GCGCACGCCG GATGAGCTGG GTTTCGATTG GAATAAATCC
TACACGAGCA ACGATCTCAC GATGAAAACG CCGACCATCA ATGTGTATGG TCAGCTGAAA
TACAAATTGT CGGATAGCTG GACCTCGCAA ACCGCGTTTT CGAGCAATAC GCGCAAGTCT
GATGGTTTTT ACCAATACCA GTTCATCCGC GGCGCCGTGG CCGATACCCT GCTGGAACGC
AATATTTCAT TGCAAAACAC GACCAACAAT GCGATTGACG TACAGCAGAA TTTTATCGGT
GATTTCAAAA TCGGCAGCTT GCGGAACCGC GTCGTGGTGG GCCTCGACTT TTTGAACCGC
ACCGCGCATA ATAACAACTC GCCGTACATT GTGTTCGATA ATGTAAGCGG CATCAATAAC
GACCCGAACT ATCTGAAAAT CAACCGAACG TCGGTAGAAG CGCGGCTGGC AACAGACAAT
GCTGCGCCTA CGCGTAATTA CAATTCAGGC AATGTGTACA GCGCCTACTT TTCGGATGTG
CTGAATGTGA CCGACCGCCT GCTCGCGATG ATCAGCCTGC GCATCGACCG GTTTGAGAAC
AAAGGCACAT TAAACCACGC CACACGCACC TATGTGGCTA ACACGCAGTT TAAGCAAACG
GCCGTTTCGC CGAAGTTTGG CGTGGTGTAC CAGGTGATTA AGGACCGGCT CTCGGTTTTT
GGAAACTATA TGAACGGCTT TTTCAATTTA GCGCCCGTAA CGCAGCCGCT GCCTGACATT
TCCGGCGTGT TCAAACCCCA GCAAGCCAAC CAGCTCGAAG GCGGTATCAA ACTCGAAAGC
TACCAGGGTA AGCTGAATAT GACCGTGAGC TACTACGACA TCAAGGTCGA CAATACCACC
CGCACCGAAG TGCTCGTGCG CGATGGTAAA AATTACAACA TTACAGTGCA GGATGGCACC
CAATACAGCC GCGGCATCGA GGTCGAGATC ATCGCCAATC CCATCACAGG CCTCAATCTC
GTGGCGGGTT ACAGCCATAA CGACAGCAAG CTGACGAAAT CGACCGTTGC GCTGGAAGGC
CGCCGCCCGG CCAATGCAGG CCCGGCCGAC CTTGCCAATG CGTGGATCAG TTACAATCTG
CCATTCGGAA AGCTCAAAGG ACTTGGAGCC GGTATCGGCG GGAACTATAT CAGCGAGCAT
TTGACGGCCA ACTCGGTGGT GACGGGCATT TTCACCATTC CATCCTACAC GGTGCTCAAC
TCGACTATTT TTTACAACAC GAAAGCATGG CGACTGGGCC TGAAATTCGA CAATATGCTG
GATAAGAAAT ACTTCGCCGG ACAAGGCGTG CTCACGCCGC AAATGCCCAA AAATTTCTCA
GCCAATCTGA CCATCAAGTT TTAG
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| Protein sequence | MQLNYTSPQT GIKNSFAPLR KCMAAVLCAT ALLNADSLHA QAPVLAKAVN LKLHDVRLSD
ALAQIGDQTG TSISYSSTQL DVAKKVNANL ANIPVKDALH RVVGSSLKEL HVQENVITIE
ANEGRGALRG TLKTSDGKPA EFVNITVKGT GKGAQSDANG QFLIRNIPAG QHTVVIQLLG
YEPIERPVTI EADQTVAFEP IFLNEDSKAL QEVVISGDIN KFSKKESEYV AKMPVSNMEN
PQVYSALSKT LFTEQLITDF SNIVKNAPGV YKIQANRGIN SDGATFYALR GFRTEMAMVD
GLPVQTNGEF DPINVEKVEV IKGPSATLFG SAVTSFGGLM NIVTKKPVEI AGGEIGYTTG
SFGLNRLTAD IYSPINASKN LLLRVNAAYQ YQGSFQDAGF RRSLVIAPSL EYRVNERMTV
LFNAGIYQGE MTSPSAIFLN RTRQFVARTP DELGFDWNKS YTSNDLTMKT PTINVYGQLK
YKLSDSWTSQ TAFSSNTRKS DGFYQYQFIR GAVADTLLER NISLQNTTNN AIDVQQNFIG
DFKIGSLRNR VVVGLDFLNR TAHNNNSPYI VFDNVSGINN DPNYLKINRT SVEARLATDN
AAPTRNYNSG NVYSAYFSDV LNVTDRLLAM ISLRIDRFEN KGTLNHATRT YVANTQFKQT
AVSPKFGVVY QVIKDRLSVF GNYMNGFFNL APVTQPLPDI SGVFKPQQAN QLEGGIKLES
YQGKLNMTVS YYDIKVDNTT RTEVLVRDGK NYNITVQDGT QYSRGIEVEI IANPITGLNL
VAGYSHNDSK LTKSTVALEG RRPANAGPAD LANAWISYNL PFGKLKGLGA GIGGNYISEH
LTANSVVTGI FTIPSYTVLN STIFYNTKAW RLGLKFDNML DKKYFAGQGV LTPQMPKNFS
ANLTIKF
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