| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3220 |
|---|
| Symbol | |
|---|
| ID | 8226795 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 3947708 |
|---|
| End bp | 3951055 |
|---|
| Gene Length | 3348 bp |
|---|
| Protein Length | 1115 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644931049 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003087597 |
|---|
| Protein GI | 255036976 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGTGG CGGTTTTTCT GGTCGGTCCG GCTTTCGCGG CGACGAAGTC CGACAAGACG
ATCAGAGGAA AGGTTACTTC CAAAATTGAC GGCGCGGCCC TGCCGGGCGT TAGCATTATC
GTGAAAGGTA CTCAAACGGG CACTTCCACG GACGCCTCCG GAAACTACGC GATCAATGTG
AACGAGGGAG CCCGGCCGGT GCTGGTTTTT TCCTATATCG GACACGAAAC GCAGGAGGTG
ATTGTCGGCA ACCAATCGGT AATCGACGTG GTGCTGGCCG AAGGTGTCGA AACGCTGAAT
GAAACGGTGG TGACGGCATT GAACCTCTCG CGCGAGAAGC GTTCGCTCGG TTACGCCATT
GCCGAAGTGG ATGGCAAGGA CATCAGCCGG GTGGCGCAGG AGAATGTGCT CAACTCGCTC
TCCGGCCGCG TACCGGGCGT GACGATCAGC TCTACCGGCG GCACGGGCTC GTCGGTCAGC
ATGATCATCC GCGGTGCCAC GTCGCTCAGC AATGATAACC AGCCACTTTT CGTGGTCGAC
GGCGTGCCCA TCGCCAACAC TTTGAACAAC GTGAGCCAGG TGGGCAACGA CAACCGCGTC
GATTACGGCA ATGCGATTTC CAGCATTAAC CCCGACGATG TGGAGAGCGT TTCCATCCTG
AAAGGTCCCA ATGCAGCGGC ACTCTACGGC TCGCGGGCAG GCCACGGGGT GGTGCTTATT
ACGACAAAAA GCGGTAGCAA GTCGAAAAAA ATGACGGTTT CCATTAACTC CAACACCGTT
TTCGACAAAC CCTTCAGATA CCTGAACATG CACAGCAAGT TTGCGACGGG CGTGCTTCCA
TTCACGCCCG ACAACAACCC ATACCCGGGC GGCGTGCTGG TGATTGACGA GAAATCTGCC
GGCGGCGTAG GCCCGGAGCT TGATAAAGGT TACAAAGCCA TTCAATGGAA CAGCCCGAAA
GACGCCGACG GAAATCCGAT TGCTACGGAC CTGGTGTCGC ACCCCGACAA TGTGAAAAAC
TTCGTGCGAA CCGGGATCAC CACCACGAAC GGCGTTTCGA TTGCCAACAG CAACGACCTG
CTGAGCTACC GCCTTTCCTA TTCCAACATG TCCAACCGCG GCATTATCCC TAACTCTGAT
TTGTTCCGTA ACTCATTCAA TATCAATTCG TCGGTGAAGC TTGGTAAGAA AGTGACGGTG
AGTACTAACA TTGATTTCAG CCGTAACAAC TCCAACAACC GGCCCGCTAC CAACCGTGGA
ACCAATCCGC TCCAATGGGC GTATGCCGTG TCACCGCACA TTGATATACG CGACCTGCGC
GATTACTGGG TGCCCGGGCA GGAAGGTTTG CAGCAGCTGT CGCAAGGCCC GGGTGCATTT
AATAACCCGT GGTTCCTCGC CTACGAAGTC AACAACAGCT TTGTGCGCGA CCGGGTGTTC
GGCAACGTGA AGGCCGACTG GCAAATCACG CCGCACCTGA GCCTGATGGG CCGTTATGCG
CTCGACACCT ATCGCGAAGA ACGCCAGACC AAGATCGGCA ACAGCTACAC CAACGATAGC
CGGGGCGGTT TCGGGCTTAT CAACCTGTCG AGATTTGAGC GCAATGCGGA TTTTTTGCTG
ACCTACAAGC GTGATATCAG TGATTTCAGC GTGTCTGTTT CCGGTGGGGG CAATACCCGT
TATCAGAAGA ATACGGACCT CAACTCAGCC ACCAGAAACG GCACGGGGCT GATCATTCCC
GGACTTTACA CATTGGCGAA CATCGCTCCG GCCAACCTCA ATTACAGCAG CTATTTGTAC
GAGCGGGCCG TTTTCAGCGC CTATGGATTG GCTAATTTGG GTTTCAAAGA CATGATTTAC
CTGGATATTA CAGCCCGCAA CGACTGGTCG AGCACCTTGC CGAAGGCCAA CCGGTCGTAT
TTCTATCCGT CTGCGTCTTT GAGTTTGGTG CTGAACGAAA TGATCCCGAT GAGCAATCAG
ATCAGCCTGT TCAAACTGCG GGGCGGCTGG GCGCAGGTGG GTAATGACAC CAATCCGTAT
AGCCTCCTGG CAACACTCAG CAATGCGGGC GCCTGGGATG GGATTACGCG TCTTTCAAAA
TCGGGGCAGA TCCTGCTGCC GGACCTGAAA CCGGAAATCG CCACTTCGTA TGAATATGGT
TTGGATTTGA ACCTCTACCG CAACCGCCTG CGGCTGACCG CCACTTACTA CCAGGTCGAA
AACCGCAACC AGATCATTCC GACCAAACTT CCCGGATCGA GTGGTTTTAC TTCCAAAAAC
ATCAATGCGG GCCTGCTCGT GAGCAAAGGG TTGGAACTGA CATTGGGCGG CACGCCGATC
GACAAAAACG GCTGGCGCTG GGATATCAAT GCCAACTGGT CGAGAAACCG CACGACCATC
AAATCGCTTT CGGAAGGTTT GGATTTCTAC ACACTCTGGA CCGACGCAAA GGGCGGCGCG
TGGACGTACG TAGGCGAGCA GATCGGCGAC ATTTACGACG CGGAGATCGT CACGGTGAAG
GACCAGAATT CGCCTTACTA TGGTTACCCC ATTCTGGACA TTAATGGCTC CTGGCAGGCA
GTGAGCGCAT CTAACTCGCG GAACAAGATC GGAAACTTCA ACCCGGATTT TCTGATGGGC
CTGCAAACAT CGCTGTCGTA CAAAGGCTTT ACCCTCAATA TGTCCTTCGA TTGGCGCCAG
GGCGGCGATT TCGTTTCCCA AACCTACCGT TATGGCGAGT CTGACCTGAA ATCGCAACGG
TTTTTGGATA ACCTGATCAA CCCGAACGGC ATGACCGGCG ACCAGCTGAG GGACTATCTT
ATCAACAATG ACAAGGTGGT TATTCGCGGC AACCAATTCA ATATCGTTGG CGGGCCTACC
AAAGAGTATG GCGGGTTTCC GTTCAAATAC GGCGGCAATA CGTACGATTA TGCCGTGTTC
AACCCGGGCG TGATCGCCCA GTACAACGAA GCCGGGGAGA TTGTGGGGTA CACCGAAAAC
CTTGGCGGGG CGGGCACGAA ATACATTCCT TATGGCGACA ACTATCCGTG GGACTTCACC
CGCGCAGCCA CATTCGACGC GTCGTTCATC AAATTGCGTG AAATCTCGCT CGGCTACGAC
CTTCCGTCGG CTTTCGTGAA ACGCATTGGT CTGCAAAATG CCAACATCGC CGTGTACAGC
CGGAACATTA TCCTGTGGAC TAAGGCCAAA ATCGGTATCG ATCCCGAGCA GGCATTCCAG
CAGGAGTCGG GCGCGCAGGC CGGTACGCAG TTCAAGCAGG GTATCGAGCG CTACAATGTA
ACGCCGTGGG TAATTCCGGT TGGTTTCAAG CTGGGGTTAA CTTTCTGA
|
|---|
| Protein sequence | MFVAVFLVGP AFAATKSDKT IRGKVTSKID GAALPGVSII VKGTQTGTST DASGNYAINV
NEGARPVLVF SYIGHETQEV IVGNQSVIDV VLAEGVETLN ETVVTALNLS REKRSLGYAI
AEVDGKDISR VAQENVLNSL SGRVPGVTIS STGGTGSSVS MIIRGATSLS NDNQPLFVVD
GVPIANTLNN VSQVGNDNRV DYGNAISSIN PDDVESVSIL KGPNAAALYG SRAGHGVVLI
TTKSGSKSKK MTVSINSNTV FDKPFRYLNM HSKFATGVLP FTPDNNPYPG GVLVIDEKSA
GGVGPELDKG YKAIQWNSPK DADGNPIATD LVSHPDNVKN FVRTGITTTN GVSIANSNDL
LSYRLSYSNM SNRGIIPNSD LFRNSFNINS SVKLGKKVTV STNIDFSRNN SNNRPATNRG
TNPLQWAYAV SPHIDIRDLR DYWVPGQEGL QQLSQGPGAF NNPWFLAYEV NNSFVRDRVF
GNVKADWQIT PHLSLMGRYA LDTYREERQT KIGNSYTNDS RGGFGLINLS RFERNADFLL
TYKRDISDFS VSVSGGGNTR YQKNTDLNSA TRNGTGLIIP GLYTLANIAP ANLNYSSYLY
ERAVFSAYGL ANLGFKDMIY LDITARNDWS STLPKANRSY FYPSASLSLV LNEMIPMSNQ
ISLFKLRGGW AQVGNDTNPY SLLATLSNAG AWDGITRLSK SGQILLPDLK PEIATSYEYG
LDLNLYRNRL RLTATYYQVE NRNQIIPTKL PGSSGFTSKN INAGLLVSKG LELTLGGTPI
DKNGWRWDIN ANWSRNRTTI KSLSEGLDFY TLWTDAKGGA WTYVGEQIGD IYDAEIVTVK
DQNSPYYGYP ILDINGSWQA VSASNSRNKI GNFNPDFLMG LQTSLSYKGF TLNMSFDWRQ
GGDFVSQTYR YGESDLKSQR FLDNLINPNG MTGDQLRDYL INNDKVVIRG NQFNIVGGPT
KEYGGFPFKY GGNTYDYAVF NPGVIAQYNE AGEIVGYTEN LGGAGTKYIP YGDNYPWDFT
RAATFDASFI KLREISLGYD LPSAFVKRIG LQNANIAVYS RNIILWTKAK IGIDPEQAFQ
QESGAQAGTQ FKQGIERYNV TPWVIPVGFK LGLTF
|
|---|
| |