| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3139 |
|---|
| Symbol | |
|---|
| ID | 8226714 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 3830388 |
|---|
| End bp | 3831245 |
|---|
| Gene Length | 858 bp |
|---|
| Protein Length | 285 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644930969 |
|---|
| Product | prephenate dehydrogenase |
|---|
| Protein accession | YP_003087517 |
|---|
| Protein GI | 255036896 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0287] Prephenate dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAATCA GTATCATAGG GGTCGGCTTG CTGGGCGGGT CGTTTGCCCT GGGACTGCGC
GAGAAATACC CGCACGTGAA ATTCGTGGGG GTGGACAACT CGTCGGTTAA TCAGAAAATA
GCATTGGCGA AAGGGATCGT GGACGAGATC CTGACGCTCG ACGAGGCATT GCAGGTGTCG
GAGCTGAATG TGCTCGCGAC GCCGGTTGAC GCCATTACCA AATTATTGCC CTACATGCTC
GATCACCTGC CCGACGGCCG GACGATCACC GACCTGGGCT CGACGAAGGA ATTGATCTGC
AAACTCGTGG ATAAACATCC GAAACGTGGC CAGTTCGTAG CCGCGCACCC GATGGCCGGT
ACCGAAAATT CGGGCCCCGG CGCAGCATTC CGAGAGCTTT TGGAGGGTAA AAACGTGATT
ATTTGCGACA AGGAAAAAAG TCATCCCGAT TCGCTTGGGC TTGTGGAAAC CTTCCTGCGC
GATGTGGGCA TGAAAATCCA TTATATGAAG CCCGTAGAGC ACGATTTACA CCTTGCCTAC
GTGTCGCACC TGAGCCATAT CAGCTCATTT GCATTGGGTA TGACGGTGCT GGACAAGGAG
CGCGACGAGC GCGCGATCTT CGACATGGCT AGTACCGGTT TTTCTTCAAC AGTCCGCCTC
GCGAAAAGCT CGCCGCAAAT GTGGGCCCCG ATTTTCGACC AGAACAAGAA GAACGTTTCC
AAGGCATTGG GCGATTACAT CGAGCTATTG AAAAAATTCA AAGAAGCCAT CGACGGTCGT
GATTTCGATG CCAGCCTTTC TTATATGGCC CGGGCAAATG ATATAGGGCG GGTTTTGGCG
GGAATTGAGA AGAAATAA
|
|---|
| Protein sequence | MIISIIGVGL LGGSFALGLR EKYPHVKFVG VDNSSVNQKI ALAKGIVDEI LTLDEALQVS
ELNVLATPVD AITKLLPYML DHLPDGRTIT DLGSTKELIC KLVDKHPKRG QFVAAHPMAG
TENSGPGAAF RELLEGKNVI ICDKEKSHPD SLGLVETFLR DVGMKIHYMK PVEHDLHLAY
VSHLSHISSF ALGMTVLDKE RDERAIFDMA STGFSSTVRL AKSSPQMWAP IFDQNKKNVS
KALGDYIELL KKFKEAIDGR DFDASLSYMA RANDIGRVLA GIEKK
|
|---|
| |