| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3085 |
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| Symbol | |
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| ID | 8226659 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 3773083 |
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| End bp | 3773982 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 644930916 |
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| Product | DNA polymerase LigD, polymerase domain protein |
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| Protein accession | YP_003087465 |
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| Protein GI | 255036844 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02778] DNA polymerase LigD, polymerase domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.884253 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAAAGA AAGCGGAGAT CACCCATCCC GAGAAAATTT ACTGGCCCGA CGAGCACATT
ACCAAAGGCG AGCTGATCGA TTATTACCGG AATATCGCGA CATACATTCT GCCATATATG
AAAAACAGGC CGCTTTCGCT GCGCAGGCAG CCCAATGGCA TTAAAGACGA GGGATTTTTC
CAGAAAGACG CGAGCGATTC GGTGCCGGAA TGGATCAAAA CCTTTGAAAT ACTGGCCGAA
TCCACAGGAA AGATGGTCAA TTACCATGTG GTGAACGATG TCGAAAGCCT GCTTTACATC
GCGAACCTGG GCTGCATCGA AATGAACCCT TGGAATTCGA CCATCAACAA GCTGGAAAAT
CCGGATTGGG TGGTGATGGA CATCGACCCG TCGGCCAAAA ACACGTTCGA TGACGTGATC
GACGTCGCAT TGACCATCAA ACAAATCCTC GGCGAAATGG ACGTGGAAGG GTTTTGCAAA
ACCTCCGGCG CGAGCGGTAT GCACGTTTAC ATTCCATTCG GCAGAAAATA CGATTACGAC
CAGGCCCGCG ACTTTGCTGA ACTGCTCGCG CACATGGTGG TGGAACGGAT ACCGAAAATC
ACCACGCTTG AACGCTCACT CTCGAAACGC AAAAAGAATC AGATTTACGT GGATTACCTG
CAAAACCGCA TCGGGCAAAC ACTCGCATGT GCGTACAGCG CCCGCCCGAA ACCCGGCGCA
ACGGTGTCAA CGCCGCTGGA ATGGAGCGAA GTGCAGCACG GCCTGAGCCC GAAGGATTTT
ACAATTAAGA ACATTTTCGA CCGGCTCGAC AAAAAAGGTG ACCTTTTCAA AGGTGTGCTC
GGCAAGGGCA TTAACCTCAA AAAAGCCCTG CAAAAGCTCT CGGTACCGGC CCAGGATTAG
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| Protein sequence | MKKKAEITHP EKIYWPDEHI TKGELIDYYR NIATYILPYM KNRPLSLRRQ PNGIKDEGFF
QKDASDSVPE WIKTFEILAE STGKMVNYHV VNDVESLLYI ANLGCIEMNP WNSTINKLEN
PDWVVMDIDP SAKNTFDDVI DVALTIKQIL GEMDVEGFCK TSGASGMHVY IPFGRKYDYD
QARDFAELLA HMVVERIPKI TTLERSLSKR KKNQIYVDYL QNRIGQTLAC AYSARPKPGA
TVSTPLEWSE VQHGLSPKDF TIKNIFDRLD KKGDLFKGVL GKGINLKKAL QKLSVPAQD
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