Gene Dfer_3039 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_3039 
Symbol 
ID8226613 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp3716623 
End bp3716961 
Gene Length339 bp 
Protein Length112 aa 
Translation table11 
GC content54% 
IMG OID644930870 
ProductCupin 2 conserved barrel domain protein 
Protein accessionYP_003087419 
Protein GI255036798 
COG category[S] Function unknown 
COG ID[COG1917] Uncharacterized conserved protein, contains double-stranded beta-helix domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.124018 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTTTTG TCAATTTCAA AACCAATAAA GTAGTCAAAA TCTGGGACGG GATTTACGGC 
ACGCTCAGCC ATTCGGAACA ACAAACTTTC GGCCATTTCA CCATCGAAGG CGGAACGGTG
CTGCCCGAGC ACAGCCATTT TCACGAACAA TGGTGCCATG TGCTGGAAGG CCAGCTCGAA
TTTACCATCG ACGGTGAAAC GCTGCTGCTC ACGCCCGGTA TGACGGCCCA CATTCCCCCG
CACGCACCGC ATTCCGCAGT CGCGCGCACG GAATGCAGGG TGATTGATTG CTTTACGCCC
GCGCGGCAGG ATTTCATCGA GCTGGAAAAA CAGTCGTAA
 
Protein sequence
MPFVNFKTNK VVKIWDGIYG TLSHSEQQTF GHFTIEGGTV LPEHSHFHEQ WCHVLEGQLE 
FTIDGETLLL TPGMTAHIPP HAPHSAVART ECRVIDCFTP ARQDFIELEK QS