| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_3024 |
|---|
| Symbol | |
|---|
| ID | 8226598 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 3699352 |
|---|
| End bp | 3700926 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644930855 |
|---|
| Product | RagB/SusD domain protein |
|---|
| Protein accession | YP_003087404 |
|---|
| Protein GI | 255036783 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.865833 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA TCAGGTACTA TATATGCTGG GCACTGCTGT CGGTGCTGGC CACTTCCTGC
CAGGATGCGC TCGAACTTGC GCCGGAGGAC TATTTCGGGA ACAGCAATTT CTGGCAGAAC
GAAGCCCAGG TGAGCAACTT CATGGTGGGC CTGCACAAGC AGTTCCGCGA CAACCAGTTC
CAGTTCCTGC GCCTGGGCGA AATGCGCGGC GGGACGTACA GCAACGTCGA CCGGCAGGCC
ACTTCACTCA ACGAGCTGCC CGTGATCGAG CAACGGTTGG AAGAAACATC TTCCGGCGTG
AGCAGCTGGG CAGGTTTTTA CGGGCCGATT TTGCAGATCA ATCTGTTTAT CCAAAAGGTA
GAAAGCCTTG GTTTCCTCTC TGAAAGCCGG AAAAACTACC TGCTTGGGCA GGCCTATGCC
ATGCGGGCTT ACTACTATTT CCATTTGCTG CGCACCTACG GCGGCGTGCC GCTCGTGCTG
GAAGCCGACG TGCTGAATGG TACCACCGAC GCCGTGCTGC TGCGTAAGGC TAGGGCCAGT
GAGCAGGCGG TGGCGGATGC GGTGAAGGCC GATGTCGATA AGGCGGTGAG CCTGTTCGGA
ATGCAAGCCG CTGCGACGGA TAAAAGCCAG TGGTCGCCCA ATGCCGCGCG GATGCTGAAA
GGCGAGGTGT ACCTCTGGAC AGCGAAAGTA TACGGCAATG CGGCCGATCT GGCGGCGGCG
AAAACGGCAT TGGAAGCAAT CACCGGAACC AGCCTGCTGC CGAACTTCGC CAACGTTTTT
GCCTACAACC AAAAGAATAA CAACGAGGTG ATCTTCGCCG TGCGCTACCG CGTGGGCGAG
GCCGAAATGT CCGGCGTGGC GGCTTATACC TATTCCACCT TTAACATGAA CGGCCTGCAT
TACAAGGATT CCACGGCCAG CGCGGGTGTG GGTAATTTCC TGGTCGACCC ATTGTTGCTG
GCAGCTTCCA ATTCACAGCA GGTTATCCAG CGGTACGCTT ACACATTTGA GTTATTCCAA
TCCTACCACC TCGCCGATAC GCGCCGGGAT GCTACATTCT ATGATTATTA CAAGGTGAAT
ACCGATGTGA AACCCTTCGT GCCGACCATT AGAAACACGG CATTGGTGAA ATTCCTCGGT
ACGATCGACG CCAACAAGCG CTATTTCTCT GATGACTGGC CGGTATACCG CGAGGCCGAC
CGGCTTCTGA TGTTGGCGGA GATTAGCAAT GCGCAGGGCG GCGACCCTTC GGAGTACATT
CAGGCTGTCC GCGACCGGGC ATTCGGCGGC AAGGACCCGA AACCGTTCGT AAATGGAGGC
AAGGATGCCA ATGAGCTGGC GATTTTCCAC GAGCGCACCT GGGAGTTTGT GCACGAAGGC
AAACGCTGGT ACGACCTGCG CCGCATGAAA GCCGGCAACG AGCCGCTGGT ATTCAAAAGT
ACGGCGCATC CGTACGGATT GCTTGACAAG TCCACGCAGG GTTACCGCAT CCTGTGGCCC
ATTGAAGCGG CAATCTGGAC CAACGACCCG CTCGTGACGC AAACGCCGGG TTACAGCACC
ACGCGACCTA ACTAG
|
|---|
| Protein sequence | MKKIRYYICW ALLSVLATSC QDALELAPED YFGNSNFWQN EAQVSNFMVG LHKQFRDNQF
QFLRLGEMRG GTYSNVDRQA TSLNELPVIE QRLEETSSGV SSWAGFYGPI LQINLFIQKV
ESLGFLSESR KNYLLGQAYA MRAYYYFHLL RTYGGVPLVL EADVLNGTTD AVLLRKARAS
EQAVADAVKA DVDKAVSLFG MQAAATDKSQ WSPNAARMLK GEVYLWTAKV YGNAADLAAA
KTALEAITGT SLLPNFANVF AYNQKNNNEV IFAVRYRVGE AEMSGVAAYT YSTFNMNGLH
YKDSTASAGV GNFLVDPLLL AASNSQQVIQ RYAYTFELFQ SYHLADTRRD ATFYDYYKVN
TDVKPFVPTI RNTALVKFLG TIDANKRYFS DDWPVYREAD RLLMLAEISN AQGGDPSEYI
QAVRDRAFGG KDPKPFVNGG KDANELAIFH ERTWEFVHEG KRWYDLRRMK AGNEPLVFKS
TAHPYGLLDK STQGYRILWP IEAAIWTNDP LVTQTPGYST TRPN
|
|---|
| |