| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2898 |
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| Symbol | |
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| ID | 8226471 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 3564129 |
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| End bp | 3566678 |
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| Gene Length | 2550 bp |
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| Protein Length | 849 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644930728 |
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| Product | Lytic transglycosylase catalytic |
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| Protein accession | YP_003087278 |
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| Protein GI | 255036657 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1388] FOG: LysM repeat |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.52326 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAGAA CTCCCATTAA CAACATCATC TCTTTTGTTA TCGCCCTGCT GCTGACCAGC
AATGCAGTTT TTGCACAGGC CCCCGAAATC CCTTCCAGCG TCTCCTTCGG AGGCATTACC
GTCAAATTCG ACCGTGGTGC GCAGGATATT ATCGAGGAAG ACGTCAAAAG TCTGATGTCG
AATAAAAAAT TCTGGGAAGA AAAAATGGAC CGCGCCATCA TGCACTTCCC GATCGTGGAA
GGCATTCTGA TGGACGAAGA AGTGCCCATC GACTTTAAAT ACCTGGCGGT ACAGGAAAGC
TCCTTCCGCC CCGATGTCGT TTCGAGCTCC AATGCCGTGG GCTACTGGCA GTTCAAGCCC
GAAACCGCGC GCGAACTGAA CCTGCGTGTC GATAATGACA TCGATGAAAG AAAAAATATC
AGCTCATCCA CGCACGCGGC TGCCTGGTAT TTGAAAAAGA ACAACCAGCA GTTCAACAAC
TGGGTAACGA CCTTGTATTC TTATTATCAG GGTGCAGGCG GTGTTAAAAA AGTAGTTCCT
GCGAGCTGGG CCTATGCACG CGAGGTAACG CTTACGAGCA AAACCGACCG CTATATGCTC
CGGTTTTTTG CCCACAAGAT TGCATTGGAA GCCGGTATCG AGCGCTACAA ATCGCCGAAT
GCTTTTGTGT TGATGGAATC CGATTACGGT AAAGGCCAGT CGCTGGACGA CATTGCCCGC
TCGCTGGGTG TGCCTGCCGC CGAATTGAAA AACCACAACA GATGGCTCAA CGACGATAAA
ATCCCGAACG ACCGCGAATA CCTTGTGACA TTGCCGGTGC CGGTGGATCA GGTGGCGTCC
GTGCGCGAAA AACTGTCGCT TCCACCACGC CAGACCGCCG TTGCGTCCGT TTACGAGGAC
ACGGGATATC CTGTTTTGAA AAAATCGGCC GTTCAGCTGG ACGAGCCTAA TTCACCTACA
CTTTACGAGA TCAATGGATT GCCGGGTATC GAAGCCCGCG CAGGCGATCA GCCCCGAACG
CTGGCCAAAG CCGCAGGCAT CCGCACGCCG CGTTTCATGC GCTACAACGA CCTGCTGGCT
GACATGCCGC TCGTTCCCGG ACAAGTATAT TACCTCTCGC GCAAGCGTAA AAAAGCCGAC
GTTCCTTCGC ACGTGGCACG CCCCGGAGAT ACGTGGCTGA GCGTTTCGCA GCAATATGGT
ATCCGGTTGG TGAACCTGTT GAAATTCAAC CGCACCACCA GCCGCAACTA TCCTATCCAG
ACCGGCCAGG TGCTTTTCCT GAACAAAAAG CGCCCGCGCA AACAACCGAT CGAGATCATT
GCCCCGCCGC AGCCGACCTC GCCTGCTAAA AAGGACTCGG TAATCGCGGT GGTGCCGCAA
AAGGCGCCGG TATCGGCTAC CACATCCCCT GCCGCCTCCA ACAACAACAT CCCCGCCAAT
GCATCGGGAC GTAAGAAATA CACACCGGTT TTGGTAGAAA AATCAGAAAA CAGCCCGGCG
AAAGAGCCCG AGACCGTCGC GTCGTCACCG TCCGGCGCGT CGACTTCCGG CGGAACCTCG
TCTAGTGCAG CGGTTGCCGG TGCAACGGTT GCCGGCGTGG CATCCGCGGC TGGCAATGCC
GCCGGCAGCG CAGCAGGCTT GTACAAACCT TCGGGCAAAA CTTCGCCTAA TGCCCCTGCT
CCTAATGACG ACCGCGTGGT CATTATTACA CAGGACGATA CCAACAGCAC ATTCAAATCG
GCGGAGGAAG AAAGGCCCGT TGCCAAGCCC GGTTCACCGG CTAAGGTAAT TACGCCAAAC
GATACGCGCA CTACGGCGTC GTCCGGCTCG GTGTACTCAC GCATGCGTGC GGAACGCGAC
GCCGAAGCAG CGAAGGAAGC GCCCGCTAAA AAGGAAAGCG AGCCCGCAAA TTGGAGCAAT
GCAGAAGAAA AAGCAGTAAC CACTTCATCC ACGGCACCTG CCTACCACAC GGTGCAGTCG
GGCGACACGT ATTTCGGCAT TGCAAGCAAA TACAACCTCT CCCTGCGCGA ATTGCTGACG
CTCAACAACC GCACCGCGCA GAGCCGGCTG GTATCCGGCC AGCGATTGAT CGTTTCGAAA
GCGGGCGAAG CACCGGCAGC ACCGGCCAAA GTGGCTGTGG AGCGCCCGGC ACCAGCCTCG
ACATTCAAAA CGCCTGAAGA GATCAAGGAA GAAACGCGCC TTTCGGCAAC GCCCGGCAGC
GAATTCCATA CCGTACAGAG CGGACAAACG TATTACAGCA TTTCGAAGGC TTACGGAATC
AGCATCAAAG AACTGCTCGA ACTGAACAAT CTGACCGACT CCGATCGCTT GAAATCGGGC
CAGAAACTGC GCGTGAAGAA AGGTGAGGGC GGTGAAGCAG CTTCCGCAAG CCAGCCTTCC
GGCACGCAAA CGCACACCGT GGCGCCCGGC GAAACGCTCT TCCGCATTGC CCAGACATAC
CATACCAATG TGGAGGACAT CAAGAAATTA AACAATATGT CCGGAAATAG TGTTATGGTG
GGACAAAAAC TCAAAATACC TCAGCAATAG
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| Protein sequence | MARTPINNII SFVIALLLTS NAVFAQAPEI PSSVSFGGIT VKFDRGAQDI IEEDVKSLMS
NKKFWEEKMD RAIMHFPIVE GILMDEEVPI DFKYLAVQES SFRPDVVSSS NAVGYWQFKP
ETARELNLRV DNDIDERKNI SSSTHAAAWY LKKNNQQFNN WVTTLYSYYQ GAGGVKKVVP
ASWAYAREVT LTSKTDRYML RFFAHKIALE AGIERYKSPN AFVLMESDYG KGQSLDDIAR
SLGVPAAELK NHNRWLNDDK IPNDREYLVT LPVPVDQVAS VREKLSLPPR QTAVASVYED
TGYPVLKKSA VQLDEPNSPT LYEINGLPGI EARAGDQPRT LAKAAGIRTP RFMRYNDLLA
DMPLVPGQVY YLSRKRKKAD VPSHVARPGD TWLSVSQQYG IRLVNLLKFN RTTSRNYPIQ
TGQVLFLNKK RPRKQPIEII APPQPTSPAK KDSVIAVVPQ KAPVSATTSP AASNNNIPAN
ASGRKKYTPV LVEKSENSPA KEPETVASSP SGASTSGGTS SSAAVAGATV AGVASAAGNA
AGSAAGLYKP SGKTSPNAPA PNDDRVVIIT QDDTNSTFKS AEEERPVAKP GSPAKVITPN
DTRTTASSGS VYSRMRAERD AEAAKEAPAK KESEPANWSN AEEKAVTTSS TAPAYHTVQS
GDTYFGIASK YNLSLRELLT LNNRTAQSRL VSGQRLIVSK AGEAPAAPAK VAVERPAPAS
TFKTPEEIKE ETRLSATPGS EFHTVQSGQT YYSISKAYGI SIKELLELNN LTDSDRLKSG
QKLRVKKGEG GEAASASQPS GTQTHTVAPG ETLFRIAQTY HTNVEDIKKL NNMSGNSVMV
GQKLKIPQQ
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