| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2861 |
|---|
| Symbol | |
|---|
| ID | 8226434 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 3524986 |
|---|
| End bp | 3526578 |
|---|
| Gene Length | 1593 bp |
|---|
| Protein Length | 530 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644930691 |
|---|
| Product | beta-lactamase |
|---|
| Protein accession | YP_003087241 |
|---|
| Protein GI | 255036620 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.120992 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCACA ACCGCAGGGA ATTCCTTCAA AAATTAGGGT TTGGTGCCCT TCAATTGGGT
GTAATCAGCG CAATTCCGGC ATCGGCCTGG GCGTCGTCGC TCAGCTACGG ACAATTGCCG
CGCAGCTCCC CGGGAGCCCA GGGAATGTCG GCCAAAGGCA TTCTGGACTT TGCCAACGCC
GTCGAAACCG ACCGTCTGAA CCTGCACAGT CTGATGGTCC TGCGGCAAGG GAAAGTGGTT
GCCGAAGGCT GGTGGGCGCC CTATGCGCCG GATTTGAAGC ATACATTATA TTCGCTCAGC
AAAAGCTTTA CGTCCAGCGC GATCGGTTTC GCGGTGGCGG AAGGTAAGCT GAAAGTGGAT
GATAAGGTCG TTTCCTTCTT CCCCGACGAG AAACCCGCTA CCGTGAGCGC GAATCTCGCG
GCTATGCGCG TACGCGACCT GCTCAGCATG TCGACGGGCC ACGACAAAGA CACCACCGGC
AAACTGCGCG AATCGGGCAG TGATAACTGG GTGAAATCGT TTCTCGCGCA GCCCGTCGAG
CATGAGCCGG GAACATTCTT CGTGTATAAT AGCGGCGCCA CGTACATGCT ATCGGCGATT
ATTCAAAAGC TAACAGGTCA GACACTGCTC GAATACCTCA AACCGCGGCT TTTCCAGCCA
TTGGTGATCG AGGATGTAGA TTGGGAGGTA GATCCGAAAG GCATTAATAC CGGCGGTTGG
GGATTGCGCG TGAAAACGGA GGATATTGCC AAGTTCGGGC AATTGTACCT GCAAAAAGGG
GAATATAATG GCAAACGCAT TCTTCCTGCC GCGTGGGTGG AAGAAGCCAC GCGCTCGCAT
ATCATGTCCA AAGGTAGCAA CCGCAAGCCC GAAGACGACG ACTGGCAACA AGGCTACGGC
TACCAGTTCT GGCGCTGCCG GAATGGTGCC TACCGCGGCG ACGGTGCATT TGGGCAGTAT
TGCATTGTAA TGCCCAAAGA GGACATGGTA GTGGCCATCA CCAGCGAAAC CAGCGACATG
CAGGCCATCC TCAACCACGT GTGGGCACAC ATCCTGCCCG CCGTAAAAGC CACCGGCGTG
CCCGCAGACA AGGATGTGCA AAACCAGATG CAGAAAAAAC TGACCTCACT CGCATTACCC
CTAACCCCCG GAAAGCCTAC CTCCGAACTG GCTTCTAAAC TGAATGGCAA GGCATTTAAA
CTGGCGGATA ATGATCTGAA AATTAGTAAA GTCGCTTTTG AATTCGACAA AGGCTGGTGC
CTGTTCCGGC TGACGGATGC TAAGGGCGAA CACCTCGTGG TAAATGGATT GGGCAACTGG
AAAATCGGTC TGACCGATTT ATCGACTATG CCGCTTAAAC TCGTACTCAC TCCCGTTCCC
GGAGAAAAAA AGACCAAAAT CGCCGCCAAC GGCGCCTGGA TCGATGACGC CACTTTCGAA
ATGACGTGGC GTTTCATCGA AACCGCGCAT TACGAAACCG TGCGCTGCAA GTTCGAAGGA
GATAATTTGC AACTAGAATT CAAAAGAAGC CTCGCGATTA TCGGCAACAC GAAAGACCCG
CGGCCGGTGC TGAGCGGGAA GGTGGTTGCG TAG
|
|---|
| Protein sequence | MSHNRREFLQ KLGFGALQLG VISAIPASAW ASSLSYGQLP RSSPGAQGMS AKGILDFANA
VETDRLNLHS LMVLRQGKVV AEGWWAPYAP DLKHTLYSLS KSFTSSAIGF AVAEGKLKVD
DKVVSFFPDE KPATVSANLA AMRVRDLLSM STGHDKDTTG KLRESGSDNW VKSFLAQPVE
HEPGTFFVYN SGATYMLSAI IQKLTGQTLL EYLKPRLFQP LVIEDVDWEV DPKGINTGGW
GLRVKTEDIA KFGQLYLQKG EYNGKRILPA AWVEEATRSH IMSKGSNRKP EDDDWQQGYG
YQFWRCRNGA YRGDGAFGQY CIVMPKEDMV VAITSETSDM QAILNHVWAH ILPAVKATGV
PADKDVQNQM QKKLTSLALP LTPGKPTSEL ASKLNGKAFK LADNDLKISK VAFEFDKGWC
LFRLTDAKGE HLVVNGLGNW KIGLTDLSTM PLKLVLTPVP GEKKTKIAAN GAWIDDATFE
MTWRFIETAH YETVRCKFEG DNLQLEFKRS LAIIGNTKDP RPVLSGKVVA
|
|---|
| |