| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2841 |
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| Symbol | |
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| ID | 8226414 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 3505113 |
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| End bp | 3506951 |
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| Gene Length | 1839 bp |
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| Protein Length | 612 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644930671 |
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| Product | glycosyl hydrolase family 88 |
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| Protein accession | YP_003087221 |
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| Protein GI | 255036600 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4225] Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.137267 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.120992 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGATT CGTTCATGGC GACGCACAAA GATTCGATTT TGGTGGGCAA AAACACGGCC
ACCAAATGGG ACTACGAGCA GGGATTAATG CTGAAAGCCA TCGAAAAAGT GTGGTATAGA
ACCGGTGAAG GCAAATATTT CGAATACATC CGCAAGGACA TCGACCAGTA CGTGCGCCCG
GACGGCAGCA TCCGCACCTA TCGCGCCGAC GATTTCAATA TCGATAATAT TCCGCCCGGA
CGCGCATTGC TGACCTTGTA TCAGCAATCG CTTCCAGATA AGGAAAAATA CAAAAAAGCC
GCCGACCTGC TCTGGAAGCA GCTCGAAACG CAGCCCCGCA CGAAAGAAGG CGGTTACTGG
CACAAAAAGC GTTATCCCTA CCAGATGTGG CTCGACGGCC TGTTTATGGG CGAGCCGTTC
GCGGCGGAAT ACAGTGCCAT TTTCCACCAT CCCGACCATT TCGACGACAT TGTAAAGCAA
TTCGCATTGA TCGAAAAATA TGCGGTGGAT GAAAAGACGG GCCTGGTTTA CCATGCGTAC
GACGAAAGCC GTGAACAGAA ATGGGCCGAT AAATCGACCG GTCGCTCACC GAGCTTCTGG
GCACGGGCCA TTGGCTGGTA TGCCATTGCG CTGGTGGATG TGCTGGATTA TCTTCCGGCA
CAGCATGCGG GAAGAGCGCA GCTGATCGGC TATTTGCAAC GGCTGGCCCC CGTGCTGGCA
AAATACCAGG ATCCCGCCTC CGGCGCCTGG TACCAGGTGA TCGACCAGGG CAACCGGGCC
GGAAATTACC TCGAAGCATC AGCCTCGTGC ATGTTCGTAT ATGCGCTCGC GAAAGGCGCG
CGGCTCGGGT ACATTCCTGA GGCATTTGCG GCGAATGCTA AGAAAGGCTA CGAGGGAATC
CTTCAAAATT TTGTAGAAAA AGAAGCCAAC GGCTCTTTAA GCCTCAATAA AACCGTAAGC
GTGGGCGGCC TCGGCGGCAC GCCTTACCGC GACGGCACCT ACGAATATTA CCTAAGCGAG
CCCATTCGTA AGAACGATCT GAAAGGCATC GGCCCATTCA TTTTTGCCAG CATTGAAATG
GAGATAGCCG CCGAAAATGC AGCCGGGAAA GGCAAAACGG TGGGTTTGGA TTACTATTTC
AACCATGAAA CCCGCAAAGA CCTGACTGGC GCGCCGGAAC AATTCCACTA TACCTGGGAA
GACCGGATGC ATTCGGGGTT CTGGCTTTGG GGCAATACAT TCCGCGAGTT GGGAGCCAAA
ACCGTTTCGC TTCCGGCAGC ACCCACCGCG GCCGGGTTAA AAGACGTCGA TGTGTACATC
ATCGTCGATC CCGACACGAA AAAAGAAACG CCCGAGCCGC ATTTCATCGA CGACCAGTCC
ATTTCCGAGA TCGAAAAATG GGTCAAAGCG GGTGGCGTGC TGGTATTGAT GGCTAACGAC
ACGGCCAACT GTGAAATCCC GCATTTCAAC AAGCTGGCCG CGAAATTCGG GATTCAGTTT
ACGAACAAAA ACCGCAATAT GGTGCAAGGC ACGCAGTTCG AGCAGGGGAC GCTGATGATC
ACCGGCGAAG CCAAAGCCGT TTTTCCCAAT ACACAAAAAA TCTATATCAA AGAACTCTCG
CCCCTCGCGC TCACACCGCC TGCCAAAGCA CTTCTGACCG ACCAGGGTGA TGTGATTCTG
GGTATTTCAA AATATGGAAA AGGCACGGTG TTCGCCGTCG GCGATCCGTG GCTTTACAAT
GAATATGTAG ACGGTCGCAG GATCGATACC AGCTTCCAGA ATTTTGAAGC CGGTAAAGAC
CTCGCCGGTT GGTTGTTGAA ACAGGTCGTT AAAAAGTAA
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| Protein sequence | MADSFMATHK DSILVGKNTA TKWDYEQGLM LKAIEKVWYR TGEGKYFEYI RKDIDQYVRP
DGSIRTYRAD DFNIDNIPPG RALLTLYQQS LPDKEKYKKA ADLLWKQLET QPRTKEGGYW
HKKRYPYQMW LDGLFMGEPF AAEYSAIFHH PDHFDDIVKQ FALIEKYAVD EKTGLVYHAY
DESREQKWAD KSTGRSPSFW ARAIGWYAIA LVDVLDYLPA QHAGRAQLIG YLQRLAPVLA
KYQDPASGAW YQVIDQGNRA GNYLEASASC MFVYALAKGA RLGYIPEAFA ANAKKGYEGI
LQNFVEKEAN GSLSLNKTVS VGGLGGTPYR DGTYEYYLSE PIRKNDLKGI GPFIFASIEM
EIAAENAAGK GKTVGLDYYF NHETRKDLTG APEQFHYTWE DRMHSGFWLW GNTFRELGAK
TVSLPAAPTA AGLKDVDVYI IVDPDTKKET PEPHFIDDQS ISEIEKWVKA GGVLVLMAND
TANCEIPHFN KLAAKFGIQF TNKNRNMVQG TQFEQGTLMI TGEAKAVFPN TQKIYIKELS
PLALTPPAKA LLTDQGDVIL GISKYGKGTV FAVGDPWLYN EYVDGRRIDT SFQNFEAGKD
LAGWLLKQVV KK
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