| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2829 |
|---|
| Symbol | |
|---|
| ID | 8226402 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 3492267 |
|---|
| End bp | 3492887 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644930659 |
|---|
| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | YP_003087209 |
|---|
| Protein GI | 255036588 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGACCGAAA ATCAAAAACA GATAACGGTG CACTCTTCCG ACCCAGAAAT AGTCAGCGCG
ATAAGGCGGG GCGATGAACA GGCTTTTGAG CAAACCTTCC GTACCTATTA TCAACGGCTG
TGCAACTACG CCTGCACGAT GCTCAAAGAT GAAGAAGAAT CGGAAGAGGT CGTGCAAACG
GTTTTCCTGA CCATCTGGGA AAAGCGCGAG GACCTCGAAA TTACCCTTTC ACTGAAGTCG
TATTTGTACC GTGCCGTGCA TAATCACTGC CTCAACCGGT TCAAGCACGC TACCGTGCGG
GAGGCGCACA AGGATTACAC CATGTACTTT TCGAGCGGCT CATACGATTC GGTTACGGAG
GTGATCCACG CCGGTGAGCT GGAAGAGCGC ATTGAACGCG CCGTGAGCAC ATTGCCCGAG
CAATGCCAGA AAGCATTCAG GCTGAGCCGT TTTGAAGAAT TGAAGTATCA GGAAATTGCA
GATCAGTTGG GAATATCCAT TAAAACGGTG GAAAATCAGA TAGGGAAAGC ATTGAAAATT
CTGCGCGCGG AACTGGCGGA TTACCTGCCG GTTACGCTTT GGTTGTTTGG TAGCATTGTT
GAACAGTTAA TCGGATCGTA A
|
|---|
| Protein sequence | MTENQKQITV HSSDPEIVSA IRRGDEQAFE QTFRTYYQRL CNYACTMLKD EEESEEVVQT
VFLTIWEKRE DLEITLSLKS YLYRAVHNHC LNRFKHATVR EAHKDYTMYF SSGSYDSVTE
VIHAGELEER IERAVSTLPE QCQKAFRLSR FEELKYQEIA DQLGISIKTV ENQIGKALKI
LRAELADYLP VTLWLFGSIV EQLIGS
|
|---|
| |