| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2535 |
|---|
| Symbol | |
|---|
| ID | 8226107 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 3129153 |
|---|
| End bp | 3130559 |
|---|
| Gene Length | 1407 bp |
|---|
| Protein Length | 468 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644930367 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_003086918 |
|---|
| Protein GI | 255036297 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2202] FOG: PAS/PAC domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.993201 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTACAG AGAAGCAGGA AGGATTTGAG AATGAGAAGC CATTGGCTTC AGAGGTAATG
TACCACGAAC TTTTTGACCT CAACCCACAG CCGATGTGGG TATATGACGT GGAAACCTAT
CGCATATTGG ATGTGAATGA GGCGGCCGTG CGCAACTACG GTTACACCCG CGAGGAGTTC
CTGACTATGA CGATCCTGGC GCTCAGGCCA CAGGAAGACG TACCGGCAGT GCTGCAAAGC
GTAGAACTGG TGCGGCAGCA CACCAGGCTG TATACGTCCG GATTTTACAG GCACAGCAGG
AAGAACGGCG AGGTTATCGA CGTGCTGATC CAGAGCAATA TCGTGTACAT GCAAGGCCGG
AAAGCGGAAT TGGTCCTATC CACCGACGTC ACCACGTGGG TTGCGTCCGA ACGCGAGCGC
AGGGCTTCCG AGAACAAATT CAAAGCGATT TTCGACAACA CCACCGACGC CATCGTACTC
TGCGACGACC ATGGCTGCTG CGTGGACATG AACGAAGCCA CACTCCGTCT CCTCGGCTAT
CAGTCGGCAG AGCTGCAAGG CATGCACATC GACGATTTTC TCCAGCTGCC GCAGGGAATA
CCCTTTCATG TGGTATGGAA GAACTTCCTC AATGGTGAAA TTCTCAACGG TTTGATGAAA
ATAGCGCGCA AAAACGGCTC TCATATCACC GGAAGTTTCA ATGCAAAACC CAACATTCTT
CCCGGCATGC ACATGTGCGT AATCACCGAC GTGACCGAGC GCCTGGAAAA GAAACGCGAA
CTCATGGAGA GCGAGCGGCG CTTTAAGGCA TTGGTCCAGG AAGGGGCAGA CCTCATTGCG
ATCGTCGACA AGCGGGGTAA CTACATGTTC GTCAGCGAAA GCAGCCACCC GATTCTCGGA
ATTCGGCCCG AGGAGTTTAT AGGTAAAAAT GCATTCGACT GGATACATCC CGATGATCGC
GAGGCAGTTC TGGCACTATT TTTAACCATC AGCGAGCATC GGCAGATCAA AACGGAACCC
TACCGGTTTA TGGACGGGGC GGGCACTTAC AGGTGGATCA CAACAACGGC TACCAATATG
AGCGACGATC CGGCTGTGGG CGGCGTCGTG GCCAATTCGA GGGACATCAC CGATGCGGTG
GAGAAAGCAC GGGCGCTGCT CGTCAGCAAC GAACGCTATC GCCAGCAGAA TGAAAGGCTG
AGGGAGATTG CCTGGACGCA ATCACACGTG GTGCGGGCGC CATTGACACG CCTGATGGGC
CTCGCCGATT TGCTCCATTC GGGTGACTGC GGGGGAATGC CCCTTGAAAC GGTGCTATCG
CTGATCAGGT CGTCGGCTGG TGAACTGGAC GAAGTGATCC GGGAGATTGT ACACAAAGCA
GATAAAGTTC AGAACGATGA CGAATGA
|
|---|
| Protein sequence | MSTEKQEGFE NEKPLASEVM YHELFDLNPQ PMWVYDVETY RILDVNEAAV RNYGYTREEF
LTMTILALRP QEDVPAVLQS VELVRQHTRL YTSGFYRHSR KNGEVIDVLI QSNIVYMQGR
KAELVLSTDV TTWVASERER RASENKFKAI FDNTTDAIVL CDDHGCCVDM NEATLRLLGY
QSAELQGMHI DDFLQLPQGI PFHVVWKNFL NGEILNGLMK IARKNGSHIT GSFNAKPNIL
PGMHMCVITD VTERLEKKRE LMESERRFKA LVQEGADLIA IVDKRGNYMF VSESSHPILG
IRPEEFIGKN AFDWIHPDDR EAVLALFLTI SEHRQIKTEP YRFMDGAGTY RWITTTATNM
SDDPAVGGVV ANSRDITDAV EKARALLVSN ERYRQQNERL REIAWTQSHV VRAPLTRLMG
LADLLHSGDC GGMPLETVLS LIRSSAGELD EVIREIVHKA DKVQNDDE
|
|---|
| |