Gene Dfer_2527 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_2527 
Symbol 
ID8226099 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp3112238 
End bp3116539 
Gene Length4302 bp 
Protein Length1433 aa 
Translation table11 
GC content51% 
IMG OID644930359 
ProductFG-GAP repeat protein 
Protein accessionYP_003086910 
Protein GI255036289 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000205902 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAAAAA AGGATTTACT AAAAATTGTC TTTGCGTTGT TTCTGGTGAC TTTTTTTGCC 
GGGAAGATAA ATAGGGAAAC GGCTCCCCCG CCTCCAAAAG GTAAGGAGGT AGCACAGCCA
CACCTTACGC CGAAAAAGGA GCTAGAAGGA AGCAATGTCG ACAACGCGAA GATCATGCAA
ATCATCTCCG AGCGCGAATA TCATATTACA AAGGATGCCC AGGGACGTCT CCAGAGCCCG
AACCGCGAGC AGAATCTCCG GGCATACTAT AAGCCGGGAA GATTGACTAT CGAAAATCGC
CGGGCCGACG CGGGAAATCA TTTCAGCCTA CAATTAATTA ATAAGGGAAT TTATGCCGAT
GGCGAAAAGC TGTACACGCC GGAGATAAAT GCTGCGCAGG AGCCTTCATC CAATGAGTTG
AAAATCGCAC ATGGCGCTTT TACGGAGGAA TTTATTAATA CGAAGGAAGG GATCAGGCAG
AATTTTGTGA TCCACAGGGC TCCGAAGGGA ACCAAGCATC TTGCGGCGCA TCTTCGTGCC
GAAGGTCTGG AAGTAGAGGA TCGCGGGAAC GATGAACTGC GCCTTTATGC AAACAGCGGC
GGTGAAAAAC GTCTTCGATT GATTTATAAT GATATTCACT GCTGGGATGC TAACGGAAAG
GTGCTGGAAT CATCGCTTGG TTTTCGGGAC GGGGAAATTG TTCTGGATGT GAATGCAGCA
GAGGCAGACT ACCCGGTCAC AATCGATCCT ATTATTGCCA ACGGAAATCC CGGTAATGCT
GCCGCAACGG TGCAGGGCGA CCAGAGCGCC GCGGGATTGG GCTGTTCCGT GTCCAGTGCA
GGCGATGTGA ACGGTGATGG TTACAGCGAT GTCGTGGCTG GGGCCTACGC TTATGATAAT
AGTGAAGCAA ATGAAGGGGT CGCGTTTGTT TTCCACGGAT CTGCCGCTGG AATTTCGTCG
ACGCCCGCCA TTATTCTGGA AGCCAACCAG GCAGGCGCGC AGTTTGGATT TTCGGTAGCG
GGGGCGGGGG ATGTGAACAA CGATGGTTTC AGTGATGTGG TGATCGGTGC ACCCAAATAT
TCGAATGTTG AGGTGGAAGA GGGAGCGGCG TTCGTTTATT ATGGATCGTT GTCCGGCTTG
TCGCAATCGT CGGTAACGGT CCTGGAATCG GGTCAGGATA ATGCGAATAG CGGCTATTCT
GTCGCGACAG GCGGTGATGT AAACCGGGAT GGATTCAGCG ATGTGCTCGT AGGGGCTCCA
TTTTTTGATA TGGGTGAAGA CAATGAAGGT GTTATTTTCG TATACAATGG TTCCGGAACC
GGCGTAGCTA ATGTTGCGGT GAGTTTCGGG CAAAGCAATT TTGCAGGAGG AATGCTTGGA
TTTTCCGTCG CTTGTGCGGG TGATGTGAAC GGCGATGGAT ACAGTGATGT GATAGCCGGG
GCGCTTGGTT ATGAGGATCA GGCGGTGTCC AATACAACCG GTGCTGCATT TATTTACCAT
GGTTCGGCAA TCGGATTTTC TTTTAATAAA AAACTATGGG CCAATACGGA TGCCAATATG
GGATTCTCGG TAGCAGGAGC AGGTGATGTG AATGGCGATG GATACAGCGA TGTGGTCGTA
GGCGCGAACA AACACCGGGA AGACGATGGA GCTGCGTATG TATTCCATGG TTCGGCTGTC
GGAGTAAATT CCACGATTGC GACCACACTC ACGATCGTGG ATTCCGACTC GCAAATGGGC
AATTCGGTTG CTTGCGCGGG TGATGTCAAT GGTGATAATT TTAGCGATAT CATCGTAGGT
GCACCGAAGT TTTCGGACGG ACAAAGCCTC GAAGGTGCCG CATTCATCTA CCAGGGCTCG
CTTGCAGGGG TAAATGATGT GGCGGTATCT ACAATCCAGG GAAACCAGGC TTCTGCAAGT
ATGGGTTTCT CGGTAGCAAG CGCTGGTGAT GTAAATGGGG ATGGTTACAG CGACGTTTTC
GTAGGTGCTT ACACGTATGA TTTGGGCCAA ACTACCGAGG GGTGTGCATT TGTGTATCAC
GGTTCGGCCG CCAGCTCCGC TACTGCATTC AAGATTACGA AGGAAATGAA TCAAGCAGAT
GCATCCTTTG GCTATTCGGT GGCCAGTGCC GGGGATGTGA ACGGGGACGG TTTCAGCGAT
GTAATAGTAG GTGCACCGCT ATTCGATCAG GGCGAGGTGG ATGAAGGCGC CGTTTTTGTA
TTTCATGGAA GTATTTCAGG TTTGTTGTTC GTCGGCGGAA GCTTTGAGGG AAACCAGCAG
GGTGCGCGAA TGGGTTTCTC GGTAAGCTGT GCAGGTGACA TGAATGGTGA TGGCTTCAGC
GATGTGATCG TGGGGGCGCC GGTCTATAAT AATGGAGAGG CAAACGAGGG TGCAGCATTC
ATCTTTAAAG GGGATGCCAC AGGCGTCAGC TTTGGTTGGT GGCAATTGAT TTTGGATGCT
GATCAGGAGG ATGCTCGTTT TGGTTATTCG GTTGCTGGAA CCAGTGATGT GAATGGCGAC
GGGTACAGCG ATGTGATCGT GGGTGCGATA TTGTACGATC ACGACCAAAT TGATGAAGGA
GCGGCATTTG TCTACTACGG CTCTTCGCAA GGTATTGACC TTTCTCCCAG CGAGCCCATT
AATCACGATC AGTCAGGTTC TATCATGGGA TACGCTGTAA ATGGTGCGGG AGATTTAAAT
GGCGATGGTT ATAGTGACGT AATTGTAAGC GCGCCCGGAT ATACGCAAAC CCAGGATGGT
GAGGGAATAG TGTTCGTTTA CTACGGTTCG CCAACTGGGA TCAATTACAA TACGAGCCAG
TCATTTGTGG GAAATCAATT ACAGGCTAAC CTGGGCTCCG CCGTGAGTGG AGCAGGAGAT
GTGAATGGCG ACGGTTTCGG CGATATTGTG ATCGGTGCAG TAGGGTATTT TAATGGAGAA
CTCAACGAAG GAGCGGCACT CATCTACCAT GGTTCCGCTG CCGGTGTGGG CAAGGACCCT
ACTATAATTT TAGACAATAA CCAAAGCGAT TCTCGCATGG GCTACGCGGC CGCGAGCGCG
GGAGATGTGA ACGGTGATGG TTACAGCGAT ATCATTGTGG GAGCCTACGC CTACAACTTC
GGCAATGGCG AAGAGGGTGT TGCTTTTGTG TACCACGGCT CGCCAACAGC CATGGACGCG
CATGCCGAAG CGACCATAAG GTTAAATCAG GTAGGAGCCC AGTTTGGCTT TGCGGCAGCC
GGTGCAGGTG ACGTGAATGG CGACGGATAC AGTGATGTGA TCATCGGTGG ACGTCATTAC
GTGAATGGAC AAAACAATGA GGGAGGTGCA TTTGTATATC TTGGCAATCA AGGCAATGCG
GCGGGTACCC GCAACAACCT GCTCCTGTAC AACCCCGACC TCGTCAATCT GATCGATCAC
AGTACCGTTG CCAAGGCCGA GTTTGGAATC GGATTGCGGG AGAAGTCGTT TTTGGGACGG
ACGAACGCTA AGCTGGTCTG GGAGTCCGGG AAGGAGGGAG AGAGCTTTTC GAACGTGCCG
ATCACAAACA GCACGCAGTT TACGGGGCAA AATGCGGGTT ACACGGACCT GGGTACCTTA
GGTATTCAGC TAATGGACAT CGTTGTCAAA CAAGGCAAAG CGACGAAGGT CCGCGCCAGA
ACCAAATATG ATCCCGTTAC AGCCATTACC GGCCAAATGT ACAGCCCGTG GCGGTATATT
GTCACCTTGT CGTCCGGCGG GAGTGTGAAT GAGGGGACGC CGCTTCCTGT GACCCTGGTG
AGCTTTGTGG CCAGGGCGGT AGAAAAGCAG GTGGATCTCG AATGGGTCAC TTCGTCGGAA
ATCGATAGCA AAAGCTTTGA AATTCAGAGA AGCGTTGATG GGAAAAGCTG GATGACTATC
GGTGAAGTAG CAGCGAGGAA TGAGGCTAAC GGGGAGAATC GGTACAATTT TGCTGATGGC
CAACCGGTTT CAGGAAAGAA TTACTACCGG TTGAAAATGG TGGACATTGA TCTCAGCTAT
GCTTTCAGCA GCATTCAGTC CGTGACATTT GATGGGCTCG CAGGCGCCTC GGTGACCGTT
TATCCCAATC CAGCATCGCA TCAGATACAA ATCCAGGGCA ATCCCGAAGG CGTTTCTGCA
TTGCAGCTTG TCAATGCGGC GGGGCAGATC TTTTTCGAAA GCGGCAAGTT TACGCCCGAA
TTGAATGTGG AGAAACTGCC GGCAGGAACC TATCTGCTTG TGATTTCTTA TCAGGATGGG
CGACGGGAGT CGGTGAAAAT TGCATTGAAT AAAGACCTGT AA
 
Protein sequence
MEKKDLLKIV FALFLVTFFA GKINRETAPP PPKGKEVAQP HLTPKKELEG SNVDNAKIMQ 
IISEREYHIT KDAQGRLQSP NREQNLRAYY KPGRLTIENR RADAGNHFSL QLINKGIYAD
GEKLYTPEIN AAQEPSSNEL KIAHGAFTEE FINTKEGIRQ NFVIHRAPKG TKHLAAHLRA
EGLEVEDRGN DELRLYANSG GEKRLRLIYN DIHCWDANGK VLESSLGFRD GEIVLDVNAA
EADYPVTIDP IIANGNPGNA AATVQGDQSA AGLGCSVSSA GDVNGDGYSD VVAGAYAYDN
SEANEGVAFV FHGSAAGISS TPAIILEANQ AGAQFGFSVA GAGDVNNDGF SDVVIGAPKY
SNVEVEEGAA FVYYGSLSGL SQSSVTVLES GQDNANSGYS VATGGDVNRD GFSDVLVGAP
FFDMGEDNEG VIFVYNGSGT GVANVAVSFG QSNFAGGMLG FSVACAGDVN GDGYSDVIAG
ALGYEDQAVS NTTGAAFIYH GSAIGFSFNK KLWANTDANM GFSVAGAGDV NGDGYSDVVV
GANKHREDDG AAYVFHGSAV GVNSTIATTL TIVDSDSQMG NSVACAGDVN GDNFSDIIVG
APKFSDGQSL EGAAFIYQGS LAGVNDVAVS TIQGNQASAS MGFSVASAGD VNGDGYSDVF
VGAYTYDLGQ TTEGCAFVYH GSAASSATAF KITKEMNQAD ASFGYSVASA GDVNGDGFSD
VIVGAPLFDQ GEVDEGAVFV FHGSISGLLF VGGSFEGNQQ GARMGFSVSC AGDMNGDGFS
DVIVGAPVYN NGEANEGAAF IFKGDATGVS FGWWQLILDA DQEDARFGYS VAGTSDVNGD
GYSDVIVGAI LYDHDQIDEG AAFVYYGSSQ GIDLSPSEPI NHDQSGSIMG YAVNGAGDLN
GDGYSDVIVS APGYTQTQDG EGIVFVYYGS PTGINYNTSQ SFVGNQLQAN LGSAVSGAGD
VNGDGFGDIV IGAVGYFNGE LNEGAALIYH GSAAGVGKDP TIILDNNQSD SRMGYAAASA
GDVNGDGYSD IIVGAYAYNF GNGEEGVAFV YHGSPTAMDA HAEATIRLNQ VGAQFGFAAA
GAGDVNGDGY SDVIIGGRHY VNGQNNEGGA FVYLGNQGNA AGTRNNLLLY NPDLVNLIDH
STVAKAEFGI GLREKSFLGR TNAKLVWESG KEGESFSNVP ITNSTQFTGQ NAGYTDLGTL
GIQLMDIVVK QGKATKVRAR TKYDPVTAIT GQMYSPWRYI VTLSSGGSVN EGTPLPVTLV
SFVARAVEKQ VDLEWVTSSE IDSKSFEIQR SVDGKSWMTI GEVAARNEAN GENRYNFADG
QPVSGKNYYR LKMVDIDLSY AFSSIQSVTF DGLAGASVTV YPNPASHQIQ IQGNPEGVSA
LQLVNAAGQI FFESGKFTPE LNVEKLPAGT YLLVISYQDG RRESVKIALN KDL