Gene Dfer_2512 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_2512 
Symbol 
ID8226084 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp3088943 
End bp3091339 
Gene Length2397 bp 
Protein Length798 aa 
Translation table11 
GC content54% 
IMG OID644930344 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_003086895 
Protein GI255036274 
COG category[T] Signal transduction mechanisms 
COG ID[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.505413 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.958019 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGACAAGT CGAACAAACA ACTCCAACAC ACTTCCGAAT TCATCGCCGG CCCCTCAGTC 
CCGGCCAATC CATCGTACGA AAGCGAAACC AAGTTCCGCG ATACCGTAAA GCAGGCGCCT
GTGGGTATGG CGATTTTGCG CGGCGAGGAT TTTATGGTTG AAATGGCCAA CGATGCCTAT
TTGCGCATTG TGGACCGCAC CGAGAACGAA ATCGTAGGTA AATCCCTTTT TACAGGCCTG
CCGGAAGTCC GCGAATATGT GGAGCCGGTG CTGCTGAATG TACTGCATAC CGGGATTGCC
TATCACGGCA ACGAGTTTGA AGTGACGCTC CGCCGTTTCG GGCAACCTGC GCTTTGCTAT
TTCAATTTTG TGTACCAGCC GCTTTTCGAG GACGGCGGCG ATGCCGCTTC CGGGGTAATG
GTGGTGGCCA CCGAGGTAAC GCAGCAGGTT TTGTCCAAAC AGGCCCTGCA AAGCAGTGAA
AACCAGTTCC GCAACCTCGT CACACAGTCG CAATTTGCAA AAGCTATTTT CAAAGGCCGC
GATCTGGTGA TCAGCATTGC CAATGAAAGT ATGCTCAATA TCTGGCGGCG AGGGCTGGAC
GAGGTGGTAG GGAAGAGGCT GGTGGATGTT TTCCCTGAAC TCAAAGGACA AAAATTCCTC
GACCTGCTCG ACGAAGTTTA CACGACTGCC AAAATTTACC GTGAAAACGA GGCGATTGCC
TATGTAGATG GTCCCGGCGG CTTGAAAAAG CATTGCCTGG ACTTTCAATA CGCCCCCATA
TTCGAGCTGG ACGGAAGTGT GTCGGGCATT ATGGCTTCGG TGAACGACGT GACCGACAAA
GTAATGCTGC GGCAGCAGTT TGAAGAAACG GCCACCCGCC TTTCCATGGC TACCGAGGGG
ACCCGCCTGG CGATATGGGA CCTGAATCTC CAGACGAGGG AAGTCATCCA CTCGGGCAGG
CTGGCGGTTA TTTTCGGGTA TGACGAAGCC ACCGTGCTTA GCCACCCGCA AATGCGCGAG
CAGGTACATC CCGAAGACCG GCAGGCGATC GTGGAGAAAG CATTTCAGGC AGCACTCGAA
ACGGGTATTT ACTATTATGA AGCGCGCATT ATCCACCCCG ACCAATCCGT TCACTGGGTA
CGGACGCAGG GAAAAGTGTT TTTTGACGAT AATCACGTGC CGCAGCGCAT GCTGGGCACT
ATGATGGATA TTACCGACCG CAAGGAATCG GAACTGGCGC TCAAAACGAG TGAGGGCAAG
TTCAGGACAT TGGCCGACTC GCTTCCGCAG TTTGTATGGA CGGCCGATCC GGGCGGGAAC
CTCAATTATT TCAACCGTTC GATGCTTCGG TACTCGGGGC ACAGCGGCGA AGAAATGGTG
CGGCAGGGCT GGCTCGAACT CGTGCATCCC GAAGACCGCG CCGAAAGCCT GCTCCTCTGG
GCGAAGGCCG TTCAGGAAGG CAGTGATTTC GCATTCGAAC ATCGCCTCAA ACGGGCGGAC
GGCGAATACC GCTGGTACCA ATGCCGCGCC ATTCCGCAGC GCAATGCCGA CGGCGTGATC
GAAATGTGGG TAGGGACGAG CCTGGATATT CACGACAACC GGCTGTTTAT CGACCAGCTC
GAAACCAAAG TGCAGGAAAG GACGCAACAG CTCACCGTCG CCAACGATGA GCTCGTGCGA
ACGAACATGG AGCTCGCGCA GTTTGCCTAC GTGGCCAGCC ACGATTTGCA GGAGCCTTTG
CGGAAGATAC AAACCTTTGC GACACGCATT CTGGAAACGG AAAACGACAA TTTATCCGAG
CGCGGCAAAG ATTACTTCGT GCGCATGCAG GCGTCGTCCA CGCGCATGCA GCAGCTGATA
GTCGATCTGT TGGCGTTTTC GCGCGCCAAT GTTGCCGAAA AACACCTCGA AAACGCAGAT
CTCAACCTGG TACTCCAAAA CGTGAAGGAG CAATTGAGCC ACATTATTCA GACGGAAAAT
GCAGTGATCA CGAGCGATAA CCTGCCGCAC AGGCATGTGA TCGTTTACCA GTTTGAACAG
CTATTTACGA ACCTGATCGC CAATGCATTG AAATTCATCG GCCCCGGCAG GGACCCGGTG
ATTGACATCC GGTCCGGCAT GGTAGCCGGT GCAGCCATTC CGCTGGCAGG CGCGGACGCC
GCGAAGAACT ACCAGTTCAT ATCGTTTGCT GATAATGGGA TCGGGTTTGA GCCGCAATAC
AAAGACCGTA TTTTTCAGGT ATTTCAAAGG CTGCACAACC GCGCTGCGTA CGAGGGAACG
GGCATTGGTC TCGCTATTTG TAAAAAAATT GTGGAAAACC ACAAAGGACT GATCGACGCG
GTAGGGAAAC CGGGTGTTGG CTCGACATTC ATCATTTACC TGCCTGTGGA GGCCTGA
 
Protein sequence
MDKSNKQLQH TSEFIAGPSV PANPSYESET KFRDTVKQAP VGMAILRGED FMVEMANDAY 
LRIVDRTENE IVGKSLFTGL PEVREYVEPV LLNVLHTGIA YHGNEFEVTL RRFGQPALCY
FNFVYQPLFE DGGDAASGVM VVATEVTQQV LSKQALQSSE NQFRNLVTQS QFAKAIFKGR
DLVISIANES MLNIWRRGLD EVVGKRLVDV FPELKGQKFL DLLDEVYTTA KIYRENEAIA
YVDGPGGLKK HCLDFQYAPI FELDGSVSGI MASVNDVTDK VMLRQQFEET ATRLSMATEG
TRLAIWDLNL QTREVIHSGR LAVIFGYDEA TVLSHPQMRE QVHPEDRQAI VEKAFQAALE
TGIYYYEARI IHPDQSVHWV RTQGKVFFDD NHVPQRMLGT MMDITDRKES ELALKTSEGK
FRTLADSLPQ FVWTADPGGN LNYFNRSMLR YSGHSGEEMV RQGWLELVHP EDRAESLLLW
AKAVQEGSDF AFEHRLKRAD GEYRWYQCRA IPQRNADGVI EMWVGTSLDI HDNRLFIDQL
ETKVQERTQQ LTVANDELVR TNMELAQFAY VASHDLQEPL RKIQTFATRI LETENDNLSE
RGKDYFVRMQ ASSTRMQQLI VDLLAFSRAN VAEKHLENAD LNLVLQNVKE QLSHIIQTEN
AVITSDNLPH RHVIVYQFEQ LFTNLIANAL KFIGPGRDPV IDIRSGMVAG AAIPLAGADA
AKNYQFISFA DNGIGFEPQY KDRIFQVFQR LHNRAAYEGT GIGLAICKKI VENHKGLIDA
VGKPGVGSTF IIYLPVEA