Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_2512 |
Symbol | |
ID | 8226084 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 3088943 |
End bp | 3091339 |
Gene Length | 2397 bp |
Protein Length | 798 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 644930344 |
Product | PAS/PAC sensor signal transduction histidine kinase |
Protein accession | YP_003086895 |
Protein GI | 255036274 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.505413 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.958019 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGACAAGT CGAACAAACA ACTCCAACAC ACTTCCGAAT TCATCGCCGG CCCCTCAGTC CCGGCCAATC CATCGTACGA AAGCGAAACC AAGTTCCGCG ATACCGTAAA GCAGGCGCCT GTGGGTATGG CGATTTTGCG CGGCGAGGAT TTTATGGTTG AAATGGCCAA CGATGCCTAT TTGCGCATTG TGGACCGCAC CGAGAACGAA ATCGTAGGTA AATCCCTTTT TACAGGCCTG CCGGAAGTCC GCGAATATGT GGAGCCGGTG CTGCTGAATG TACTGCATAC CGGGATTGCC TATCACGGCA ACGAGTTTGA AGTGACGCTC CGCCGTTTCG GGCAACCTGC GCTTTGCTAT TTCAATTTTG TGTACCAGCC GCTTTTCGAG GACGGCGGCG ATGCCGCTTC CGGGGTAATG GTGGTGGCCA CCGAGGTAAC GCAGCAGGTT TTGTCCAAAC AGGCCCTGCA AAGCAGTGAA AACCAGTTCC GCAACCTCGT CACACAGTCG CAATTTGCAA AAGCTATTTT CAAAGGCCGC GATCTGGTGA TCAGCATTGC CAATGAAAGT ATGCTCAATA TCTGGCGGCG AGGGCTGGAC GAGGTGGTAG GGAAGAGGCT GGTGGATGTT TTCCCTGAAC TCAAAGGACA AAAATTCCTC GACCTGCTCG ACGAAGTTTA CACGACTGCC AAAATTTACC GTGAAAACGA GGCGATTGCC TATGTAGATG GTCCCGGCGG CTTGAAAAAG CATTGCCTGG ACTTTCAATA CGCCCCCATA TTCGAGCTGG ACGGAAGTGT GTCGGGCATT ATGGCTTCGG TGAACGACGT GACCGACAAA GTAATGCTGC GGCAGCAGTT TGAAGAAACG GCCACCCGCC TTTCCATGGC TACCGAGGGG ACCCGCCTGG CGATATGGGA CCTGAATCTC CAGACGAGGG AAGTCATCCA CTCGGGCAGG CTGGCGGTTA TTTTCGGGTA TGACGAAGCC ACCGTGCTTA GCCACCCGCA AATGCGCGAG CAGGTACATC CCGAAGACCG GCAGGCGATC GTGGAGAAAG CATTTCAGGC AGCACTCGAA ACGGGTATTT ACTATTATGA AGCGCGCATT ATCCACCCCG ACCAATCCGT TCACTGGGTA CGGACGCAGG GAAAAGTGTT TTTTGACGAT AATCACGTGC CGCAGCGCAT GCTGGGCACT ATGATGGATA TTACCGACCG CAAGGAATCG GAACTGGCGC TCAAAACGAG TGAGGGCAAG TTCAGGACAT TGGCCGACTC GCTTCCGCAG TTTGTATGGA CGGCCGATCC GGGCGGGAAC CTCAATTATT TCAACCGTTC GATGCTTCGG TACTCGGGGC ACAGCGGCGA AGAAATGGTG CGGCAGGGCT GGCTCGAACT CGTGCATCCC GAAGACCGCG CCGAAAGCCT GCTCCTCTGG GCGAAGGCCG TTCAGGAAGG CAGTGATTTC GCATTCGAAC ATCGCCTCAA ACGGGCGGAC GGCGAATACC GCTGGTACCA ATGCCGCGCC ATTCCGCAGC GCAATGCCGA CGGCGTGATC GAAATGTGGG TAGGGACGAG CCTGGATATT CACGACAACC GGCTGTTTAT CGACCAGCTC GAAACCAAAG TGCAGGAAAG GACGCAACAG CTCACCGTCG CCAACGATGA GCTCGTGCGA ACGAACATGG AGCTCGCGCA GTTTGCCTAC GTGGCCAGCC ACGATTTGCA GGAGCCTTTG CGGAAGATAC AAACCTTTGC GACACGCATT CTGGAAACGG AAAACGACAA TTTATCCGAG CGCGGCAAAG ATTACTTCGT GCGCATGCAG GCGTCGTCCA CGCGCATGCA GCAGCTGATA GTCGATCTGT TGGCGTTTTC GCGCGCCAAT GTTGCCGAAA AACACCTCGA AAACGCAGAT CTCAACCTGG TACTCCAAAA CGTGAAGGAG CAATTGAGCC ACATTATTCA GACGGAAAAT GCAGTGATCA CGAGCGATAA CCTGCCGCAC AGGCATGTGA TCGTTTACCA GTTTGAACAG CTATTTACGA ACCTGATCGC CAATGCATTG AAATTCATCG GCCCCGGCAG GGACCCGGTG ATTGACATCC GGTCCGGCAT GGTAGCCGGT GCAGCCATTC CGCTGGCAGG CGCGGACGCC GCGAAGAACT ACCAGTTCAT ATCGTTTGCT GATAATGGGA TCGGGTTTGA GCCGCAATAC AAAGACCGTA TTTTTCAGGT ATTTCAAAGG CTGCACAACC GCGCTGCGTA CGAGGGAACG GGCATTGGTC TCGCTATTTG TAAAAAAATT GTGGAAAACC ACAAAGGACT GATCGACGCG GTAGGGAAAC CGGGTGTTGG CTCGACATTC ATCATTTACC TGCCTGTGGA GGCCTGA
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Protein sequence | MDKSNKQLQH TSEFIAGPSV PANPSYESET KFRDTVKQAP VGMAILRGED FMVEMANDAY LRIVDRTENE IVGKSLFTGL PEVREYVEPV LLNVLHTGIA YHGNEFEVTL RRFGQPALCY FNFVYQPLFE DGGDAASGVM VVATEVTQQV LSKQALQSSE NQFRNLVTQS QFAKAIFKGR DLVISIANES MLNIWRRGLD EVVGKRLVDV FPELKGQKFL DLLDEVYTTA KIYRENEAIA YVDGPGGLKK HCLDFQYAPI FELDGSVSGI MASVNDVTDK VMLRQQFEET ATRLSMATEG TRLAIWDLNL QTREVIHSGR LAVIFGYDEA TVLSHPQMRE QVHPEDRQAI VEKAFQAALE TGIYYYEARI IHPDQSVHWV RTQGKVFFDD NHVPQRMLGT MMDITDRKES ELALKTSEGK FRTLADSLPQ FVWTADPGGN LNYFNRSMLR YSGHSGEEMV RQGWLELVHP EDRAESLLLW AKAVQEGSDF AFEHRLKRAD GEYRWYQCRA IPQRNADGVI EMWVGTSLDI HDNRLFIDQL ETKVQERTQQ LTVANDELVR TNMELAQFAY VASHDLQEPL RKIQTFATRI LETENDNLSE RGKDYFVRMQ ASSTRMQQLI VDLLAFSRAN VAEKHLENAD LNLVLQNVKE QLSHIIQTEN AVITSDNLPH RHVIVYQFEQ LFTNLIANAL KFIGPGRDPV IDIRSGMVAG AAIPLAGADA AKNYQFISFA DNGIGFEPQY KDRIFQVFQR LHNRAAYEGT GIGLAICKKI VENHKGLIDA VGKPGVGSTF IIYLPVEA
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