Gene Dfer_2438 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_2438 
Symbol 
ID8226010 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp2998895 
End bp3002284 
Gene Length3390 bp 
Protein Length1129 aa 
Translation table11 
GC content53% 
IMG OID644930270 
ProductTonB-dependent receptor plug 
Protein accessionYP_003086821 
Protein GI255036200 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGAAAAA AGTTACCCGA CACCCAACAG AAAACAGGAA CGGCGCTCAG GCGAGGCTTG 
GCTGTGATCC TGGCATGTTT GATGTTCGTT CAACCGCTCC TTGCAGCAAC GCCCCGGTCG
ATTCAGGGGA TCGAGGAGGT CAAGATCTCG CTGGATCTGA AAGAAGTGAC CCTTCAGAAT
GCCTTCATCG CGATTGAAAA GAAAAGCGAT TTCAAGTTCA TCACCACCAT CGAGCGTATC
GACAAAAAAC GGAAGGTGTC TATCCACGCG GAGAAAAAAC CGGTGAAGGA AGTGCTGGAA
AGCATCCTGA ACGGCACCGG ACTGGGCTAC ACGCAGGTGG ATAACAACAT CGTGATCAGC
AACAAAACTG CTGAAAGAGC CACCGGACAG GTGATCGCAC CTGCTCCCAC CGCCATTCAG
CTCGCAAAGG AGATCAAGGG CACCGTGAAA GACAATGCCG GAGCGGGCAT TCCGGGCACG
AACATCCTCG TGAAAGGCTC CAACGTAGGG ACCACTACCG GCGCGGACGG CACGTACGCG
ATCAATGTGC CCGACGAAAA CGCCGTGCTG GTGTTTTCGT CGATAGGCTA TGTATCGCAG
GAAGTGACCG TAGGCGGCCA AACCACGATC GACATTACGC TGGTGGAAGA TGTGAAGCAG
CTCGGCGAGG TGGTGGTAAC GGCATTGGGT ATCGAACGTA ATGCCAAAAC GCTCACCTAC
GCGACGCAGC AGATCGACGG TAAAAAGCTC ACCGACGTGC GCGACGCGAA CTTTGTGAAC
ACCCTCTCCG GTAAAGTGGC CGGCGCGGTG ATCACACAGG GTTCGTCGGG CCCCGGTTCC
GCAACCCGCG TGGTACTGCG CGGTAACCGT TCTATTGCCG GTAACAACAA TGCATTGTTC
GTGGTGGACG GTGTGCCGAT CGACAACACG GCGCGCGGCC AGGTAACGAG CGATTTCGGT
GGTATCAACG GCTCCGATGG TGCCGCGAAC ATCAACCCGG ACGACATCGA GTCGATGAAC
ATCCTGAAAG GTGCGGCAGC TTCGGCATTG TACGGCAGCC GGGCAGCCAA CGGGGTGATC
ATGATTACAA CTAAAAAAGG TAAGGCCGGC AAGGTAAGCG CGGACATTAA CTCCGGCGTG
GTGGTAGAAA CGCCATTTTT GCTGCCTAAG CTTCAAAACA CTTACGGACA GGGCAGTGGC
GGTGTGGAAA GTACCAATTC CAGCCAGAGC TGGGGTCCTG CCATGCAGAC CTATCCGAAC
AACATCAGCG ATTTCTACCG CAATGCGATC TCGACCAACA ATTCGATCGG CGTTTCGGCC
GGCTCGGAAA AGATCCAGAC GTATTTGTCT TATACCAACA ATGCCAACCA GGGTATTCTG
CGGAACAACA AGCTCATGCG GCATACCTTC AACCTCCGTT TGAACACACA GATTACCAAG
CGCCTCTCGG CCGATGCCAA AATCACCTAT ATCAACTCCG ACATTCAGAA CAAACCACGT
TCGGGTGAAG AGAGCTCTGT AACCATGAAC TTGTACAAAA TCCCGCGCAG CGTGGATTTG
AACCAATACA AAAATTTCGA GGACGCCGCA GGTAAACCTA CTTACTGGGC AAGCTCGGGC
ATTTACATGA ACCCTTACTG GACGATCAAC CGCACGTTCG AATCGGAAAA ACGTAACCGC
GTGATTTCCC TGGGTTCTGT TAAATATGAA CTGACTGACT GGCTGAACGT GCAAGGCCGG
ATCAGCTACG ACTGGTATGC CGACCGAGTG AATCGTGGTT TTTACAATAA TACTTTGCTT
TTTGCAGGAT CGGGCGGCTC CTACTGGGAC TGGACGGCCG AAACTGTGGA ACGCAACATG
GACGTGATCG TTTCGGGTAA TAACAATCTG GGTAAAGACC TGCACCTAAC CTACAACTTC
GGTGCCGGCC AGACTTACCA AAAATATTCG CAGGTAGGCG GCACCACGAC CGGCCTTACC
GTGCCTAACT TCTTCGACCT TTCGTTTGCC GCCGCATTGA CACAGCTGAC TGCATTCAGC
CAGAAAGAGC TGCAATATGT GTTTGGAACG GCGTCATTGT CGTACCGCGA CTTCATCACG
GTTGACGGCT CGGTTCGCAA CGACTGGTCT TCGACATTGC CTAAGCCTTA TTCATACGCC
TACTTCTCAT TCGGCGGTAA TGTGATCCTC ACGGAAGCAT TCAAACTGCC GGAAGTGATC
AGCTTCGCAA AACTGCGCGG ATCGTGGGCG CAGGTGGGTA ACGACACCGA CCCTTATCGT
TTGCTGCAAA CCTACACATT CACGCAGGGT GGCAATGGCG GCGGTTATAT CAACCGCAAC
ACAACCCGTC CGGCCGAGAA CCTGAAACCG GAGATTTCGT CTTCAACGGA GTTTGGTCTG
GATCTGCGCT TGTTCTCGGG CAAACTGGGA TTGGATTTTA CCTACTACAA TACCAACACG
GTGAACCAGC TGCTCACATT GCCGCAAGCT ACGCCGACCG GCTTCCAGAA CCAGTTCATC
AATGCGGGTA AAATCAACAA CAAAGGTTTC GAGATTTCAT TGACCGCCTC GCCATTGAAG
GGCAAATCGC TGACCTGGGA CGCGACGCTC AACTTCGCGC GCAACGTGAA CAAGATCATC
GAACTGCACC CGAGCATCAA AACCGCCAAC CTCGGCGGAA ACACCCGCAC TACCACGGCC
ATCGTACGTG AAGGCGGCTC ATACGGGGAT TTGCAGGCAT TTGGCTGGAA AAAAGACGCA
AATGGCAATT ACGTCGTGAA TGCGAAAGGA CTTCCGGTTG CAACGGCATT CGATAACATC
GTAGGTAACT TCAACCCTAA ATTCACGATT GGCTTCAACA ACTCGTTCTC TTACAAAAAC
TTCGTATTTA GCTTCCTCGT GGATGGCCGC GTGGGTGGCG TCATGACTTC CGGAACCGAT
GGTAACCTCG CTTACGACGG TACCGCCGAC TACACCGAAG CGCACCGCCA GGGCGGCTGG
GTATTGCCTG GCGTGACCGA AACCGGCGAG CAGAACAATG TTGCGATCGA CGCGCAGACA
TTCTGGCAAA CCGTTTCGCA GGGCCGTTAT ACCTGGGGAG AGTTCTTCAC CTACTCCACC
ACGAACTTCC GTTTGAGAGA GGCGACATTG GGCTACAACA TCCCTACCCC TCCGGGATTG
TTCATCAAAT CGCTGCGCCT TTCGCTCACT GCTCGTAACC TGTTCTTCAT TTATCGCGGC
TATGCGAAAA TGGATATTCC GGGACTTGCA AAACGTAAAC TTCCATTCGA TCCGGACGTG
AACCTCGGTG CAGGTAACTT CCAGGGATCG GAATATGGAG CCCTCCCTTC AACACGTACT
GTTGGTTTGA ATTTGAAAGT TGGATTCTAA
 
Protein sequence
MRKKLPDTQQ KTGTALRRGL AVILACLMFV QPLLAATPRS IQGIEEVKIS LDLKEVTLQN 
AFIAIEKKSD FKFITTIERI DKKRKVSIHA EKKPVKEVLE SILNGTGLGY TQVDNNIVIS
NKTAERATGQ VIAPAPTAIQ LAKEIKGTVK DNAGAGIPGT NILVKGSNVG TTTGADGTYA
INVPDENAVL VFSSIGYVSQ EVTVGGQTTI DITLVEDVKQ LGEVVVTALG IERNAKTLTY
ATQQIDGKKL TDVRDANFVN TLSGKVAGAV ITQGSSGPGS ATRVVLRGNR SIAGNNNALF
VVDGVPIDNT ARGQVTSDFG GINGSDGAAN INPDDIESMN ILKGAAASAL YGSRAANGVI
MITTKKGKAG KVSADINSGV VVETPFLLPK LQNTYGQGSG GVESTNSSQS WGPAMQTYPN
NISDFYRNAI STNNSIGVSA GSEKIQTYLS YTNNANQGIL RNNKLMRHTF NLRLNTQITK
RLSADAKITY INSDIQNKPR SGEESSVTMN LYKIPRSVDL NQYKNFEDAA GKPTYWASSG
IYMNPYWTIN RTFESEKRNR VISLGSVKYE LTDWLNVQGR ISYDWYADRV NRGFYNNTLL
FAGSGGSYWD WTAETVERNM DVIVSGNNNL GKDLHLTYNF GAGQTYQKYS QVGGTTTGLT
VPNFFDLSFA AALTQLTAFS QKELQYVFGT ASLSYRDFIT VDGSVRNDWS STLPKPYSYA
YFSFGGNVIL TEAFKLPEVI SFAKLRGSWA QVGNDTDPYR LLQTYTFTQG GNGGGYINRN
TTRPAENLKP EISSSTEFGL DLRLFSGKLG LDFTYYNTNT VNQLLTLPQA TPTGFQNQFI
NAGKINNKGF EISLTASPLK GKSLTWDATL NFARNVNKII ELHPSIKTAN LGGNTRTTTA
IVREGGSYGD LQAFGWKKDA NGNYVVNAKG LPVATAFDNI VGNFNPKFTI GFNNSFSYKN
FVFSFLVDGR VGGVMTSGTD GNLAYDGTAD YTEAHRQGGW VLPGVTETGE QNNVAIDAQT
FWQTVSQGRY TWGEFFTYST TNFRLREATL GYNIPTPPGL FIKSLRLSLT ARNLFFIYRG
YAKMDIPGLA KRKLPFDPDV NLGAGNFQGS EYGALPSTRT VGLNLKVGF