Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_2438 |
Symbol | |
ID | 8226010 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | + |
Start bp | 2998895 |
End bp | 3002284 |
Gene Length | 3390 bp |
Protein Length | 1129 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644930270 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003086821 |
Protein GI | 255036200 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGAAAAA AGTTACCCGA CACCCAACAG AAAACAGGAA CGGCGCTCAG GCGAGGCTTG GCTGTGATCC TGGCATGTTT GATGTTCGTT CAACCGCTCC TTGCAGCAAC GCCCCGGTCG ATTCAGGGGA TCGAGGAGGT CAAGATCTCG CTGGATCTGA AAGAAGTGAC CCTTCAGAAT GCCTTCATCG CGATTGAAAA GAAAAGCGAT TTCAAGTTCA TCACCACCAT CGAGCGTATC GACAAAAAAC GGAAGGTGTC TATCCACGCG GAGAAAAAAC CGGTGAAGGA AGTGCTGGAA AGCATCCTGA ACGGCACCGG ACTGGGCTAC ACGCAGGTGG ATAACAACAT CGTGATCAGC AACAAAACTG CTGAAAGAGC CACCGGACAG GTGATCGCAC CTGCTCCCAC CGCCATTCAG CTCGCAAAGG AGATCAAGGG CACCGTGAAA GACAATGCCG GAGCGGGCAT TCCGGGCACG AACATCCTCG TGAAAGGCTC CAACGTAGGG ACCACTACCG GCGCGGACGG CACGTACGCG ATCAATGTGC CCGACGAAAA CGCCGTGCTG GTGTTTTCGT CGATAGGCTA TGTATCGCAG GAAGTGACCG TAGGCGGCCA AACCACGATC GACATTACGC TGGTGGAAGA TGTGAAGCAG CTCGGCGAGG TGGTGGTAAC GGCATTGGGT ATCGAACGTA ATGCCAAAAC GCTCACCTAC GCGACGCAGC AGATCGACGG TAAAAAGCTC ACCGACGTGC GCGACGCGAA CTTTGTGAAC ACCCTCTCCG GTAAAGTGGC CGGCGCGGTG ATCACACAGG GTTCGTCGGG CCCCGGTTCC GCAACCCGCG TGGTACTGCG CGGTAACCGT TCTATTGCCG GTAACAACAA TGCATTGTTC GTGGTGGACG GTGTGCCGAT CGACAACACG GCGCGCGGCC AGGTAACGAG CGATTTCGGT GGTATCAACG GCTCCGATGG TGCCGCGAAC ATCAACCCGG ACGACATCGA GTCGATGAAC ATCCTGAAAG GTGCGGCAGC TTCGGCATTG TACGGCAGCC GGGCAGCCAA CGGGGTGATC ATGATTACAA CTAAAAAAGG TAAGGCCGGC AAGGTAAGCG CGGACATTAA CTCCGGCGTG GTGGTAGAAA CGCCATTTTT GCTGCCTAAG CTTCAAAACA CTTACGGACA GGGCAGTGGC GGTGTGGAAA GTACCAATTC CAGCCAGAGC TGGGGTCCTG CCATGCAGAC CTATCCGAAC AACATCAGCG ATTTCTACCG CAATGCGATC TCGACCAACA ATTCGATCGG CGTTTCGGCC GGCTCGGAAA AGATCCAGAC GTATTTGTCT TATACCAACA ATGCCAACCA GGGTATTCTG CGGAACAACA AGCTCATGCG GCATACCTTC AACCTCCGTT TGAACACACA GATTACCAAG CGCCTCTCGG CCGATGCCAA AATCACCTAT ATCAACTCCG ACATTCAGAA CAAACCACGT TCGGGTGAAG AGAGCTCTGT AACCATGAAC TTGTACAAAA TCCCGCGCAG CGTGGATTTG AACCAATACA AAAATTTCGA GGACGCCGCA GGTAAACCTA CTTACTGGGC AAGCTCGGGC ATTTACATGA ACCCTTACTG GACGATCAAC CGCACGTTCG AATCGGAAAA ACGTAACCGC GTGATTTCCC TGGGTTCTGT TAAATATGAA CTGACTGACT GGCTGAACGT GCAAGGCCGG ATCAGCTACG ACTGGTATGC CGACCGAGTG AATCGTGGTT TTTACAATAA TACTTTGCTT TTTGCAGGAT CGGGCGGCTC CTACTGGGAC TGGACGGCCG AAACTGTGGA ACGCAACATG GACGTGATCG TTTCGGGTAA TAACAATCTG GGTAAAGACC TGCACCTAAC CTACAACTTC GGTGCCGGCC AGACTTACCA AAAATATTCG CAGGTAGGCG GCACCACGAC CGGCCTTACC GTGCCTAACT TCTTCGACCT TTCGTTTGCC GCCGCATTGA CACAGCTGAC TGCATTCAGC CAGAAAGAGC TGCAATATGT GTTTGGAACG GCGTCATTGT CGTACCGCGA CTTCATCACG GTTGACGGCT CGGTTCGCAA CGACTGGTCT TCGACATTGC CTAAGCCTTA TTCATACGCC TACTTCTCAT TCGGCGGTAA TGTGATCCTC ACGGAAGCAT TCAAACTGCC GGAAGTGATC AGCTTCGCAA AACTGCGCGG ATCGTGGGCG CAGGTGGGTA ACGACACCGA CCCTTATCGT TTGCTGCAAA CCTACACATT CACGCAGGGT GGCAATGGCG GCGGTTATAT CAACCGCAAC ACAACCCGTC CGGCCGAGAA CCTGAAACCG GAGATTTCGT CTTCAACGGA GTTTGGTCTG GATCTGCGCT TGTTCTCGGG CAAACTGGGA TTGGATTTTA CCTACTACAA TACCAACACG GTGAACCAGC TGCTCACATT GCCGCAAGCT ACGCCGACCG GCTTCCAGAA CCAGTTCATC AATGCGGGTA AAATCAACAA CAAAGGTTTC GAGATTTCAT TGACCGCCTC GCCATTGAAG GGCAAATCGC TGACCTGGGA CGCGACGCTC AACTTCGCGC GCAACGTGAA CAAGATCATC GAACTGCACC CGAGCATCAA AACCGCCAAC CTCGGCGGAA ACACCCGCAC TACCACGGCC ATCGTACGTG AAGGCGGCTC ATACGGGGAT TTGCAGGCAT TTGGCTGGAA AAAAGACGCA AATGGCAATT ACGTCGTGAA TGCGAAAGGA CTTCCGGTTG CAACGGCATT CGATAACATC GTAGGTAACT TCAACCCTAA ATTCACGATT GGCTTCAACA ACTCGTTCTC TTACAAAAAC TTCGTATTTA GCTTCCTCGT GGATGGCCGC GTGGGTGGCG TCATGACTTC CGGAACCGAT GGTAACCTCG CTTACGACGG TACCGCCGAC TACACCGAAG CGCACCGCCA GGGCGGCTGG GTATTGCCTG GCGTGACCGA AACCGGCGAG CAGAACAATG TTGCGATCGA CGCGCAGACA TTCTGGCAAA CCGTTTCGCA GGGCCGTTAT ACCTGGGGAG AGTTCTTCAC CTACTCCACC ACGAACTTCC GTTTGAGAGA GGCGACATTG GGCTACAACA TCCCTACCCC TCCGGGATTG TTCATCAAAT CGCTGCGCCT TTCGCTCACT GCTCGTAACC TGTTCTTCAT TTATCGCGGC TATGCGAAAA TGGATATTCC GGGACTTGCA AAACGTAAAC TTCCATTCGA TCCGGACGTG AACCTCGGTG CAGGTAACTT CCAGGGATCG GAATATGGAG CCCTCCCTTC AACACGTACT GTTGGTTTGA ATTTGAAAGT TGGATTCTAA
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Protein sequence | MRKKLPDTQQ KTGTALRRGL AVILACLMFV QPLLAATPRS IQGIEEVKIS LDLKEVTLQN AFIAIEKKSD FKFITTIERI DKKRKVSIHA EKKPVKEVLE SILNGTGLGY TQVDNNIVIS NKTAERATGQ VIAPAPTAIQ LAKEIKGTVK DNAGAGIPGT NILVKGSNVG TTTGADGTYA INVPDENAVL VFSSIGYVSQ EVTVGGQTTI DITLVEDVKQ LGEVVVTALG IERNAKTLTY ATQQIDGKKL TDVRDANFVN TLSGKVAGAV ITQGSSGPGS ATRVVLRGNR SIAGNNNALF VVDGVPIDNT ARGQVTSDFG GINGSDGAAN INPDDIESMN ILKGAAASAL YGSRAANGVI MITTKKGKAG KVSADINSGV VVETPFLLPK LQNTYGQGSG GVESTNSSQS WGPAMQTYPN NISDFYRNAI STNNSIGVSA GSEKIQTYLS YTNNANQGIL RNNKLMRHTF NLRLNTQITK RLSADAKITY INSDIQNKPR SGEESSVTMN LYKIPRSVDL NQYKNFEDAA GKPTYWASSG IYMNPYWTIN RTFESEKRNR VISLGSVKYE LTDWLNVQGR ISYDWYADRV NRGFYNNTLL FAGSGGSYWD WTAETVERNM DVIVSGNNNL GKDLHLTYNF GAGQTYQKYS QVGGTTTGLT VPNFFDLSFA AALTQLTAFS QKELQYVFGT ASLSYRDFIT VDGSVRNDWS STLPKPYSYA YFSFGGNVIL TEAFKLPEVI SFAKLRGSWA QVGNDTDPYR LLQTYTFTQG GNGGGYINRN TTRPAENLKP EISSSTEFGL DLRLFSGKLG LDFTYYNTNT VNQLLTLPQA TPTGFQNQFI NAGKINNKGF EISLTASPLK GKSLTWDATL NFARNVNKII ELHPSIKTAN LGGNTRTTTA IVREGGSYGD LQAFGWKKDA NGNYVVNAKG LPVATAFDNI VGNFNPKFTI GFNNSFSYKN FVFSFLVDGR VGGVMTSGTD GNLAYDGTAD YTEAHRQGGW VLPGVTETGE QNNVAIDAQT FWQTVSQGRY TWGEFFTYST TNFRLREATL GYNIPTPPGL FIKSLRLSLT ARNLFFIYRG YAKMDIPGLA KRKLPFDPDV NLGAGNFQGS EYGALPSTRT VGLNLKVGF
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