Gene Dfer_2398 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_2398 
Symbol 
ID8225970 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp2956318 
End bp2957982 
Gene Length1665 bp 
Protein Length554 aa 
Translation table11 
GC content57% 
IMG OID644930230 
Productribulokinase 
Protein accessionYP_003086781 
Protein GI255036160 
COG category[C] Energy production and conversion 
COG ID[COG1069] Ribulose kinase 
TIGRFAM ID[TIGR01234] L-ribulokinase 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAGAGA ACTACGTCAT TGGTATCGAC TTCGGTACCG ATTCTGTGCG GGCATTAGTC 
GTAAATGCGA ATACGGGAGA GCAGGCCGGG ACGGCCGTGC AGGAATATCC GCGCTGGAAG
CAGGGCAAGT ATTGCGATGC GGGCAGCTCG CAGTTCCGGC AACATCCGCT CGATTATCTG
GAAAGTATGG AAAGCGCCGT TCGCGGAGCA TTGGACCAGG CGCCGGCCGC CGTTCGGCAG
CAGGTGCGCG GTATTTCGGT GGATACTACC GGTTCCACAC CCGTGGCCGT CGACAGGCAG
GGCACGCCGC TGGCGCTGTT GCCCGAGTTT GCCGAAAATC CGAATGGGAT GTTTATCCTT
TGGAAAGACC ACACGGCCAA TGCCGAAGCA GAGGAGATTA ACCGGCTGGC GCATCGTTAT
GACATTGATT TTACAAAATA TGTAGGCGGG ATCTATTCCT CGGAATGGTT CTGGGCCAAA
ATCCTGCGCA CGTTACGTGT GGACACGGCC GTGCGCGAGC AAGCCTTCTC ATGGGTAGAG
CATTGCGACT GGATTTCTGC CGAGCTCACG GGCATGACCG ATCCGCTCCA ACTGAAACGT
TCGCGCTGCG CCGCAGGGCA CAAAGCGCTC TGGCACCAGG ATTTCGACGG GTTACCGTCC
AATGCATTCT TCACCGAGCT CGACCCATTG CTCGACGGTC TCCGCGACCG CCTTTTCAGC
ACCACCGAAA CTTCCGACCA ACCGATGGGC ACCATTTCAA AAGAATGGGC GGCAAAGCTG
GGCATTCCCG AAAACGTCGT GATCGGCGTA GGGGCGTTTG ATGCGCACAT GGGCGCGGTA
GGGGCGCTGA TCGAGCCGTA TTCGTTGTGC AAGGTGATCG GTACTTCCAC CTGCGACATG
CTCGTGGCAC CGAACGAGGA AGTCGGGCAT TTGCTCATCA AGGGCATTTG CGGGCAGGTG
GATGGCTCCA TCGTGCCGGG TATGCTCGGT ATGGAGGCAG GGCAGTCGGC GTTTGGTGAC
ATTTATGCCT GGTTTTCCAA ACTGATCATC GAGCCTGTAC GCACATTGCT CGGCGAGGAG
GAAGCGGCTG AACTATCGAA AAAGCTGATC CCGCACCTGG CCGAACAAGC GGCGAAGTTG
CCAGTTACCG AAAAAGACAT CATCGCCATC GACTGGCTGA ACGGCCGCCG CACCCCCGAC
GCAAAACATA CGCTCAAAGG CGGACTGCTC GGCCTGAACC TCGCCAGCGA CAGCCCAAGG
ATTTTCAAGG CATTGGTAGA AGCTACCGCT TATGGCTCCA AAGCGATCGT CGAGCGGTTC
CGCAGCGAAG GTGTGCCTAT TCACCAGGTA ATCGCGATTG GCGGCGTGGC GAAGAAGTCG
GCATTTGTGA TGCAAACGCT GGCCGACGTG CTCAATATGC CTATTAAAGT GGCCACCTCC
GAGCAGGCTT GTGCATTGGG AGCGGCCATG TTCGCTTCGG TGGCGGCAGG CGTACACGCC
AATTTGCAGG AAGCGCAGGA GGCCATGAGC TCCGGTTTCG ACGCAGTGTA TGAGCCGCGC
GAGGCCCAGT CGGCCATTTA CCAGCAGCTT TATCAGAAAT ACCTCGAAGC GGGGGCTTAT
ATCGAAAATG AATTTTTACA AAAAGCATAT TTAGAACTTA CCTGA
 
Protein sequence
MEENYVIGID FGTDSVRALV VNANTGEQAG TAVQEYPRWK QGKYCDAGSS QFRQHPLDYL 
ESMESAVRGA LDQAPAAVRQ QVRGISVDTT GSTPVAVDRQ GTPLALLPEF AENPNGMFIL
WKDHTANAEA EEINRLAHRY DIDFTKYVGG IYSSEWFWAK ILRTLRVDTA VREQAFSWVE
HCDWISAELT GMTDPLQLKR SRCAAGHKAL WHQDFDGLPS NAFFTELDPL LDGLRDRLFS
TTETSDQPMG TISKEWAAKL GIPENVVIGV GAFDAHMGAV GALIEPYSLC KVIGTSTCDM
LVAPNEEVGH LLIKGICGQV DGSIVPGMLG MEAGQSAFGD IYAWFSKLII EPVRTLLGEE
EAAELSKKLI PHLAEQAAKL PVTEKDIIAI DWLNGRRTPD AKHTLKGGLL GLNLASDSPR
IFKALVEATA YGSKAIVERF RSEGVPIHQV IAIGGVAKKS AFVMQTLADV LNMPIKVATS
EQACALGAAM FASVAAGVHA NLQEAQEAMS SGFDAVYEPR EAQSAIYQQL YQKYLEAGAY
IENEFLQKAY LELT