Gene Dfer_2379 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_2379 
Symbol 
ID8225951 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp2936769 
End bp2939534 
Gene Length2766 bp 
Protein Length921 aa 
Translation table11 
GC content51% 
IMG OID644930211 
Producthypothetical protein 
Protein accessionYP_003086762 
Protein GI255036141 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGGTTG CGCACGCGCA AACCGGGGGG CGATTCACGC TGAAAGGAAC CGTTACCGAC 
ACTTCCGGCA CAGCGCTCCC CGAAGCGACC ATCATGTTAC TGCTCCCCAA AGATTCTTCA
CTCGTCAACT TCGGCAGAAC GGCCAAAGAC GGGACTTTTG AAATGAAAAA CCTGAGACGT
ACCACCTATA TTTTCAAAGT GTCGTACGTG GGTTATGTGC CTTATCAGGA GATTGTCGAT
CCTAAAAATC AGGAAGTTGT GGATCTTGGT AAAGCCAAAA TGAAGGTTTT GCAAAAAGAA
CTGTACGAAG TCGTGATCAA AACGGCCCGG GCGCCGCTGA GCATCCGGGG CGATACGGTG
GAGTTTGATG CCAAGGCATT TAAAGTACCG CCGGGATCGA GTGTGGAAGA CCTGCTGCGC
AAGCTTCCGG GTGTGCAGGT GGATGGCGAC GGGAACATTC GTGCGCAGGG TGAAGAGATT
AAACGTGTAA CGGTGGACGG TAAGCGCTTC TTCGGCGACG ATCCCAAAAT GGCCACCAAA
AACCTGCCCG CCGAGGCGAT CAACAAGGTG CAGGTCTTTA ACGGGAAAAC CGAGCAGGCC
AAAGCTACCG GCGTGGACGA CGGCAAGCGC GAAAAAACGC TGAACCTGGA ATTGAAGGAC
AGCCATAAAA AAGGCGGTTT CGGAAAGGCA GTTGCGGGCG TCGGGACGGA TTCGCGGATG
GAAGGGAAGG TGAGCTACAA CCGCTTCGAT GAGAAGCAGC AGTTTGCATT GCTTGGTTTC
GGGAATAATA CCAACCAGTC GGGCATTGCG CGTAACGATT ACCAGGATTT CAAAGGCAGC
CAGTCGTTCA ACTGGGGCGA CGACGGGGAT TTCGGATTCA GCAGCGGCCG GTACTACGGC
GGCGACGATA TCACGATCCA GCCCAACTGG GGCGGTCAGG GCTCGGAAGG GTTTACCAAA
AACTGGGCTG GCGGCGCCAA TTACAACTTC GATACGAAGA AGACAAAGCT GAGCACCAGC
TATTTCTATA ATTCCACACG TGCCATTACG GACGTGCAAA CCAGCTCCGA GAACTTCCTC
ACCAACGATT CCTACCTCAC CGACGGTAAA AACAAAACGA TTGCATTTAC CGGCAACCAT
CGCCCGGCAT TCCGTTTCGA GCACAATATC GATTCGCTCA ACACCATTAT CCTGATCAGC
AACTCGCGGA TCAATGGCGG CGATAATGAG TATACCGCCG AGCAGCGCTC GTACCGCAAT
GAGAGCATGC TCACCAACCA GTCGACCGTG AACAACCTGA GCGATTACAA CTCGTTTGCA
ATGGCGAACC TGCTGCTCTA CCGTCACAAA TTCAAGAAAA AAGGTCGGAA CTTCGCCGCC
AGCGTAGGTT ATAACATTAA CAATTCGGAT GAAGACCGGC ATCAGAATTC GGTGAACCTC
TTCTTGCAGG ATTCTACGAA AAACAGCGTG ATCAACCAGT TGCAGCAAAC CGAAAGCACC
CGCGGCAACT TCAAGGGAAG CCTGTCGTTC GTGGAGCCAT TTGCGAAGAA GTTTTTCTGG
GAAACCTTTT ACAATTACAG CACGCGGAAG GACAAGGTGG ACCGCGACGT GTTCGACGTG
GAAGGCAATG TGGACAAAGT GAACCCCTTC CTGACCCGGT ACTACACCAA CGACTTCTCC
TACAACCGCC TCGGAACGAG TGTTCGCTAC TCGCACAAGG GCCTGAATCT CGCTATGGGA
CTTGCAGGTG TGCAGTTTGA CCTCCGCGGT AAGTTCGCGC TCGACGAATC GCAGCAGGAT
ATGACGCGCG TAGACCGTAC ATTCAAAAAG TTGGTACCGA ATGTGTCTTT GAATTACAGT
CTGAAAAACA ACAAATACGT GTATGCGGAA TACGGCCTGA ACGTGCGCGA GCCATCCATT
ACCGACTTGC AGCCGATCGT GGACAACAGC AACCCGCTCT ACATCGTGGA AGGTAACCCC
GACCTGATCC CGCAAACTAC CCATAATGCC TACGCGGGTT TCAACATGTT CAATCCGGCG
AGCTTTACCA ACCTTTATGT GAATGCCTAT TATAATTACA ACGAGGACCA GATCGTGTAC
AACCGCACCA TCAGCGAAGA CCTCGTGACC ACCACCAAGC CGATGAACAT CAGCGGCGGG
AACAATTACG GCAGCTACAT TGGGTTCGGG TTTCCGTTGA AGAAAACAAA AGCGACGTTT
GGAGTGAACA CGGGGATTAA TTTTAGCAAC AACCTGACTT ATATCAATAA TGTCAAAAAC
GAGACGAAGA CGGACGGATA TAACTTCGGC GCACGGCTGG ACCTGACCCC GAGCGATGTG
TTTACGCTTT ATACCAATGC AAACTGGAAT ATCAGCGACA CCAAATACTC GATTAACACA
AGCCAGAACC AGAAGATCGT CAATGCGACC TACAATGCTG AAATGAACAT TAAAATGCCG
AAGGAAATCT ATTTCAGCGG CCGGCTGAAC TACCGGAGCT ATAAAAACGA CCAATTCGGT
TTCAACCAGC AGGTGCCGAT CCTGAACCTC TCGGTGTACA AAATAGTGTT GAAAAACAAA
AGAGGGGAGG TCCGCCTGAC CGCCAACGAC GTGTTCAAGA AAAACCTGGG TATCACGCAG
AATGCAAACC AGAACTTCTA TTCCGAACGC CGTGTGGCCA CATTGTCGCG GTACTTCATG
CTGAGCTTTA CCTACAACAT GCGCGGTATG ACGGCATCGG TGAAACGCGG TCCGGGATTC
TTTTAA
 
Protein sequence
MAVAHAQTGG RFTLKGTVTD TSGTALPEAT IMLLLPKDSS LVNFGRTAKD GTFEMKNLRR 
TTYIFKVSYV GYVPYQEIVD PKNQEVVDLG KAKMKVLQKE LYEVVIKTAR APLSIRGDTV
EFDAKAFKVP PGSSVEDLLR KLPGVQVDGD GNIRAQGEEI KRVTVDGKRF FGDDPKMATK
NLPAEAINKV QVFNGKTEQA KATGVDDGKR EKTLNLELKD SHKKGGFGKA VAGVGTDSRM
EGKVSYNRFD EKQQFALLGF GNNTNQSGIA RNDYQDFKGS QSFNWGDDGD FGFSSGRYYG
GDDITIQPNW GGQGSEGFTK NWAGGANYNF DTKKTKLSTS YFYNSTRAIT DVQTSSENFL
TNDSYLTDGK NKTIAFTGNH RPAFRFEHNI DSLNTIILIS NSRINGGDNE YTAEQRSYRN
ESMLTNQSTV NNLSDYNSFA MANLLLYRHK FKKKGRNFAA SVGYNINNSD EDRHQNSVNL
FLQDSTKNSV INQLQQTEST RGNFKGSLSF VEPFAKKFFW ETFYNYSTRK DKVDRDVFDV
EGNVDKVNPF LTRYYTNDFS YNRLGTSVRY SHKGLNLAMG LAGVQFDLRG KFALDESQQD
MTRVDRTFKK LVPNVSLNYS LKNNKYVYAE YGLNVREPSI TDLQPIVDNS NPLYIVEGNP
DLIPQTTHNA YAGFNMFNPA SFTNLYVNAY YNYNEDQIVY NRTISEDLVT TTKPMNISGG
NNYGSYIGFG FPLKKTKATF GVNTGINFSN NLTYINNVKN ETKTDGYNFG ARLDLTPSDV
FTLYTNANWN ISDTKYSINT SQNQKIVNAT YNAEMNIKMP KEIYFSGRLN YRSYKNDQFG
FNQQVPILNL SVYKIVLKNK RGEVRLTAND VFKKNLGITQ NANQNFYSER RVATLSRYFM
LSFTYNMRGM TASVKRGPGF F