| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2265 |
|---|
| Symbol | |
|---|
| ID | 8225837 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 2787811 |
|---|
| End bp | 2788392 |
|---|
| Gene Length | 582 bp |
|---|
| Protein Length | 193 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644930101 |
|---|
| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | YP_003086652 |
|---|
| Protein GI | 255036031 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGAGA TTTTAACGAA TGATGCTGAA TTGCTCCAAC TCCTGCGGTT GGGCGACCGG
GCTGCATTCG AAGAAATTTA TAACCGCTAC CGGATCAGGA TGTACCGCGC TGCGCTCAGC
AAAGTCGGGA CGAGTGAAAA TGCGATGGAG ATCGTGCAGG AGATATTTCT GGACTTGTGG
CTGCGGCGGG ACCAGGTTGT GATCGAAGAC CTGGAACGAT ATCTTTTCTC TGCCACCAAG
TACAAGGTCC TCGATTTTTA TAAAAAGGAA TTTACCCGCA AGCAATATGC CGAATCGGTC
CAGGTGACGG GGCCGGGCAA ATCGTACGAT ACCGACGAAA CGATTGCCTA TAACGAGCTG
TCGAGGTCCA TTGTCGCATG CATCGAACAG CTTCCTGAAA AAACCCGCGT CATTTTCGAC
CTGAACCGCA TACAAGGCAA GAGCGCCGAC GAAATTTCCG GCGTCCTCGG CATTCCGCTG
CGCACCGTCG AATACCACAT TACCCAGAGC CTGAAAGCGC TCCGCTTCTC GCTGCGCGAT
TACCTTCTTA CCCTGATCGT TACGCTCGGC CCCTGGTGGT AG
|
|---|
| Protein sequence | MQEILTNDAE LLQLLRLGDR AAFEEIYNRY RIRMYRAALS KVGTSENAME IVQEIFLDLW
LRRDQVVIED LERYLFSATK YKVLDFYKKE FTRKQYAESV QVTGPGKSYD TDETIAYNEL
SRSIVACIEQ LPEKTRVIFD LNRIQGKSAD EISGVLGIPL RTVEYHITQS LKALRFSLRD
YLLTLIVTLG PWW
|
|---|
| |