| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2239 |
|---|
| Symbol | |
|---|
| ID | 8225811 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 2747624 |
|---|
| End bp | 2749993 |
|---|
| Gene Length | 2370 bp |
|---|
| Protein Length | 789 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644930075 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_003086626 |
|---|
| Protein GI | 255036005 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.609704 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCA AATACATATT ACTGCTGTTG TTAACGGCGG GGATATGCCT GCATAGCACT
GCGCAGTCGG GGCTGGGTTC GCTGAGCGGA CGTATCCTGA ATGCAGAGCA ACAGGCAATC
ACAGGCGCAT CCGTTACCTT GCAGGGCACT GCGCTCGGCA CCATTACCGA TGCCGACGGC
CAGTTTGTCC TGACCGGCAT CACACCGGGT GCATACATTC TTTCAGTCTC CAACGTAGGC
TATACGGCTT ACACAGAGAG CCTTCGCATT GCAAAAGGCA AAAACGCATT CCTGAACCTG
CAACTTTCCG AAAGCAAGCA AGAACTGGAA GAAGTGCTGG TAAGCGCAGC GAAAAACAGG
TATCAGGTGC TGTCGTCCAA TTCGGCGACG CGGAGTAACA CCCCGCTGCT TTCCACGCCG
CAATCCGTGC AGGTGGTGTC GTCGGAAGTA CTGCGCGATC GCCAGGCATT TACATTGAAC
GAAATCGCCG GTTCGATGAC CGGCATGAAG GCCAATAACG GCAACGGCAA CTTCCAGATC
CGCGGTTTTA CGGCTTACTC GCCAAACGAC GCGAGTTTCC TGCTTTACAA TGGCATCCGC
GGCAACCTGT TCCTGTGGAG CCAGCAGCCG TTGCTCTACA ACATCGAGTC GGTGGAACTG
CTTCGCGGGC CGTCGGGCGC ATTGTTCAGC GAGGGCTCTC CGGGTGGGGT AGTGAATTTT
GTAACTAAAA AACCGCTGAC CGAAAAGCGG GCAACCGTGG ACCTTTCGCT GGGCAGCTGG
GCATTCGGCC GCGCGTCCGC TGATTTTACA GGGCCAATTG ACCGGCAAAA AAAGCTCTTG
TACCGCGCGA TCGTCGGATA CGACCGCAGC GAAAGTTTCA GGGATTATCA GGAAAAAAAG
AACCTTTTCA TTGCGCCGTC ATTGACGTAC CTCGTAAACA GCCGCTCTTC GCTGAACCTC
GAATTGAATT ATGCCTATTC CAAAGCAGTG CAGCAATATG ACAACGGCAG CTTCATTTAC
ACCAGGCCCG ACGGCAGTTT CGATTTTAAC CATTATTCCA ACAACCTGAC GGTCCAGAGC
CCGACGGACT ACGGTAAAAC CCGCAACATG TCGGCCACTT TGACCTTCGA TCACCAGATC
AGCGATAACC TCAAACTCAC GGTCGTGGAG CGGGCCGTGC GGAATGTCCT CGACTTCACC
GACCACATTC CGGTAGGGCG GATCAGAAAC GATTCGATCA GCCGCGGGTA TCAGGATTGG
CTTACCGACC GGTTTAGCCT GCAAACCACC GCTTTTGCTA CTTATACTGC CAAAACGGGC
GGAATCGGGC ATCAGATCAT CGTCGGCACG GACTATAACC GGTACGGTTG GACCGAGAAC
GACTATCAGT ACAAATCCTC CACCCGCATC TCCATTCTGA ACCCCGACTA CACCGGCAGT
GTGCCCGACG CCACGGTACC TGCCGACGAA TCGGACGATA ACAAGCGGGT AACCAACCTG
ATCGGCGGCT ACATCCAGGA CCAGGTAAGC ATCGGCAACA AGCTGAAAGT GCTGCTTTCA
CTGCGCTACG ACAATTACAA CGCGAAAGAA ACGCCATTGT CCGACCGGGA CAACAAGCAG
GGCGACGAGC TGCAAGCGTC CGGCTGGATT CCGCGCATCG GGGTAGTGTA TTTGCCGGTG
AACAATGTGT CCATTTACGG GACTTACCTG AAATCATTCA ATCCCCAAAC TTCGAACAAT
GTACTGGCCG GCGGCCCATT CCCGACCCGG AAAGCGACCC AGTATGAAGT AGGCTCGAAG
GCTGACGTGC TGGACAACCG CTTGTCGGCC ACGTTGTCGC TGTACCAGAT CAACTATGCC
AATATCCTCA CCGCCGCGCC AACGGACGAA AATTCGCACC GGCAGGCGGC CATCGACGGC
ACGCGCAGCC GCGGAGGTGA GTTTTCGCTC ACTGGCCACG TGGGGCCGCT CAGCCTCATT
ACCGGGTATG CATTCAATGA ACACGTGCTC GTAAGCACGA GCACCTACGG TAAAAAAGGC
GACCGCTTTG CCAATGCACC CAAACACCAG ATCAATTTCT GGGGTAAATA TGCGCTTCCC
TCCAACCTGC TGAAAGGGTT CAGCGTATCG GCGGGCGTGC GCTATGTGAG CGATCAGGTG
GGTTTGCTGA GCAACCAAAA CTTCGTGTTC CCGTCGTACA CCGTGCTGGA TGCGGCGCTA
TCTTACCAGC GCCAGCGGTT CCAGGTTCAA GTGAATGCCT ATAACCTGGC CAACAAGCAT
TATTTTACGG GAAGCCGCTC GGGGATGACG CTCGGGGGAC TGGGCGATCC GTTTAATGTG
AGATTGGGCG TGAGCTATCA GATCTGGTAA
|
|---|
| Protein sequence | MKIKYILLLL LTAGICLHST AQSGLGSLSG RILNAEQQAI TGASVTLQGT ALGTITDADG
QFVLTGITPG AYILSVSNVG YTAYTESLRI AKGKNAFLNL QLSESKQELE EVLVSAAKNR
YQVLSSNSAT RSNTPLLSTP QSVQVVSSEV LRDRQAFTLN EIAGSMTGMK ANNGNGNFQI
RGFTAYSPND ASFLLYNGIR GNLFLWSQQP LLYNIESVEL LRGPSGALFS EGSPGGVVNF
VTKKPLTEKR ATVDLSLGSW AFGRASADFT GPIDRQKKLL YRAIVGYDRS ESFRDYQEKK
NLFIAPSLTY LVNSRSSLNL ELNYAYSKAV QQYDNGSFIY TRPDGSFDFN HYSNNLTVQS
PTDYGKTRNM SATLTFDHQI SDNLKLTVVE RAVRNVLDFT DHIPVGRIRN DSISRGYQDW
LTDRFSLQTT AFATYTAKTG GIGHQIIVGT DYNRYGWTEN DYQYKSSTRI SILNPDYTGS
VPDATVPADE SDDNKRVTNL IGGYIQDQVS IGNKLKVLLS LRYDNYNAKE TPLSDRDNKQ
GDELQASGWI PRIGVVYLPV NNVSIYGTYL KSFNPQTSNN VLAGGPFPTR KATQYEVGSK
ADVLDNRLSA TLSLYQINYA NILTAAPTDE NSHRQAAIDG TRSRGGEFSL TGHVGPLSLI
TGYAFNEHVL VSTSTYGKKG DRFANAPKHQ INFWGKYALP SNLLKGFSVS AGVRYVSDQV
GLLSNQNFVF PSYTVLDAAL SYQRQRFQVQ VNAYNLANKH YFTGSRSGMT LGGLGDPFNV
RLGVSYQIW
|
|---|
| |