| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2227 |
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| Symbol | |
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| ID | 8225799 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 2729890 |
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| End bp | 2733429 |
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| Gene Length | 3540 bp |
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| Protein Length | 1179 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 644930063 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003086614 |
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| Protein GI | 255035993 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.376454 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.140411 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGAAAC ATTGCCGGCC CGATACTAGC TCCCCGGACA TCTGTGGCAA GATCAGGGAG
CCGGTTTTGC AAAAATCTTT ACGGGAAAAT CACAAAACGA TCAAAGGTAT GAAAAAACAT
CGACTGCCTG TCGAGATCAT GATAGCTATG GTTAAAATCT CCTGTTTTCA TCTTTTTCTG
GTCATGCTGA CGTTCAGTGT CAGTGTGGCC GGCGATGGCT TTGCACAGGA AATGCTTACG
CGCCCGGTGA CGGTGACGCT CGTTAACCAG GACGTCAGGG CGGCCCTGAC GCGGATCGAG
AAATCGGCCA AAGTAAAGTT CAGCTACGAG CCCGCTCTCC TGCAAAAAAG CGGGAATGTG
AGCCTGGTTG TGCACAACGA ACCCCTTGCA GCAGTGCTGG ACAAGCTGCT CAAACCGCTG
GGAATCAGTT ATAATTCATC GGGAAAATAC ATTATCCTCA CCCGCGAACC CGGCCAGGGC
CTGCGAAAGC AGGAAGGGAT GGAGGAAACG GAAGCATTCG AAAAATGGGT GACCGGAAAA
GTGAGTGACG AATCCGGCGC GGCATTGCCC GGTGTGAGCA TTCTCGTGAA AGGCACCCAA
ACCGGGACCA CCACGCAGGC CGACGGTACG TTCCGCATCG ACGTGGGCGA CAGTCCTGCA
TCCCTGATCT TTTCGTTTGT AGGCTATATG CCGCAGGAAA TCGAGGTGGG CAGCCGCTCG
GTGATGAACG TGACATTGAA AGTGGATACT AAGGCCCTGG AAGAGGTGGT GGTGGTGGGC
TATGGCACGC AAAAGCGCTC CGACCTCACA GGCTCGGTGT CGACCGTGAA AGCGAACGAG
ATTAAAAACC TCCCCGTAAG AAGTGTGAAC GAGGCCTTGC AGGGACGTGC CGCAGGCGTG
CAGGTCACGC GCAACGACGG TTCGCCGGGG GCTAATTCGG ACATTATCAT CCGCGGGGCG
GGGTCCATCG GCGGAATGGC GCCGCTTTAC ATTGTGGACG GCATCCGGAT GTCGGCAGGC
AATAACTTCA ATTTGCAGGA TGTGGAATCC ATCGAAATCC TGAAAGACGC CAGCGCAGCA
GCCATTTACG GCGCACAGGC GGCAGGCGGC GTGGTGCTGG TTACGACCAA GCGCGGCACG
TCGATGGACA AGATGAGCAT TAACCTCAAT GCGAACTACG GAGTGAGAAA GCCCGTGAAT
TTGTACAAAT TATTGAATAC CAATGATTAT TACAAAGCCA AGACCGCTTT TGGCGTGGCT
ACCGGCGGCT GGGGAGACCC CGCATCGCTG CCGGATACCG ACTGGATCGA CGCACTTTAT
TCCAACGGCG TGGAGCAAAG CTATTCGCTC GACTTGTCGG GCGCTTCGGC CAAGAGCAAT
TACTACATTT CCGCCAATTA CCAGAAGGAA GGCGGCACGA TCATTGATAA CTGGTTCAAA
CGCTACGGTT TAAGGACGAA TTCGGATTAC AAGCTCAATT CGAAACTGAA AGTAGGGGAG
ACGATGTACG CCTGGATGAC GGAGATCAAT CCGACCGTGA GCGCCACATA CCCGTTCCGT
TCGGCGCCGG TGGTGGGCAT TTACGACCCT TCCAACAGCT ACGGCGGCTG GGCCAAAACG
GGCAGCTTTT TCGGCGGACC TAACCTCGTG GGGCAGGAGC GGCAAAACCA CATGTCGAAC
CAAACGTACG CCGTCGAGGG CAATGTGTAT GCCGACTGGC AGATCATTCC GGCGCTCAGC
TTTCGTGCCA CATTCGGGGC ATCGGTGTAC AACGCGAAGA ACCTGAAATT CACGGAGGCA
TTCGATTACG GCATTATTGC CAACCGCAAT GCGTTTCTGG GCCGGGATAT CAACAACCAG
CGCAACCTCA CCGCCAACTT CGTGCTTACC TACGCCCAAA CATTCAAGCA GCACGAAATC
AAGGCGCTTG CGGGATATGA AGCTTACAAA TCCGACCTTA GTACATTGCA CGGCGAGGCG
CAGGGATTTC CGTATGTGAC TTATAATCTG GGGTTAACGA CCAATCCCGC CAGCTATGTG
ACCAACGGCG CCGAGCTGCC GGAAACGCGT CTGCTGTCGC AGTTCGGGCG GATCAATTAT
ACCTATTCGG GTAAATACCT GCTCACGGCG ACGGTCCGCC GCGATGGCTC CGACCGCTTT
GGCCCGGCCA ACAAATGGGG CGTGTTTCCA TCGGCATCGG TGGGCTGGAA GCTCAGCGAG
GAGGCATTTT TGCGGGATAA CCTGCCTGCG GTGTCGAACC TGAAACTGCG GGCGAGTTAT
GGCAAACTGG GCAGCACGAG CAACATTCCG CAATATACCT ACCAGTCGTC GTACGGCGGC
AGCGGCGGTA CCAATGCCAT GGGCCTGGCC GACGGTTCCC GTTCGAAAGG GTACGCGCTC
ACGGCCCAGC TCGTGAACGA AAACATCCGT TGGGAATCCG TATTGCAGAC CGACGTCGGC
GTGGATGTGG GGCTGCTCCG CAATGCATTG AACATCACGC TCGATTGGTA CAGCCGCCAG
ACCCAGGGGA TGATCTACCG GGTGCCCGTA GCGCCCACGG CCGGCTTCGG GGGCACATCG
GTTTTTACCA ATATCGGCCA GATGAGCAAC AAAGGCCTCG AACTCGCCGC CGATTACCGG
GGGCAAAAGG GAGATTTTAC CTACTCGCTG GCCATCAATG CAGCCTACAA CAAGAATCTC
GTGAAACAGC TGGACGGGAA TAACAACAAT CCGATCAGCG ACGGGGTGGC GGGCAACGAC
CTCGACGGCA ATGCCGGACG GACGCAGGTG GGCAACCCGA TGAGCCAGTT TTACGGCTAC
CAGGTCGACG GCATTTTCCA AAGCGACGCC GAAGTCCAAT CCCTGAACGA AAGGGTTCAG
CAGGCAGCGG GATCAACCGC GGTTTACTAT CAGAACCCGG GCACGGCGGC GGGCGACCTG
CGTTTCAGGG ATGTGAATGG CGACGGGCGC ATTACCACGC TCGACAAAAC GTTCATCGGC
AACCCCTGGC CGAAACTCAC CTATGGCCTC ACGCTCAACC TGGGCTGGAA AGGCATCGAA
CTCACCGCGT TGCTGCAAGG CATGCAGGGA GTGGATGTGT ACAACGGCAA CAAGTACTAC
ACCGAGTATT TCTACGGCGA TCACACCTCG ACCCGCGACA TCCTGAACTC TTCGTTCTTC
AACGGCAACG GCCTTACCGA CCAGCCGCGG GTAGGGGCCA CGTCGGCGTC GGGCGCATTC
ACGCGCGACC CGAACTCGAA TTACGGGCGC ATTTCGAGCT ATTTCGTGGA GGACGGCTCG
TTCCTGAAAC TCCGGAACCT GCAAATCGGC TACATGTTTT CCAGCAGTCA GCTGAAAGCA
TTGCATATGC AGGGGCTGCG CATTTACGCG CAGGGGCAGA ATCTGTTTAC ACTCACGAAG
TACTCGGGCC TCGATCCCGA AGTGCTCGGG CGTAACGGGA CCACGGCGCG GGGCATCGAC
ACGATTTTCT CCTACCCGCG TTCGATGCTG CTTTCGATGG GTCTCAGTCT CAGTTTCTAA
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| Protein sequence | MRKHCRPDTS SPDICGKIRE PVLQKSLREN HKTIKGMKKH RLPVEIMIAM VKISCFHLFL
VMLTFSVSVA GDGFAQEMLT RPVTVTLVNQ DVRAALTRIE KSAKVKFSYE PALLQKSGNV
SLVVHNEPLA AVLDKLLKPL GISYNSSGKY IILTREPGQG LRKQEGMEET EAFEKWVTGK
VSDESGAALP GVSILVKGTQ TGTTTQADGT FRIDVGDSPA SLIFSFVGYM PQEIEVGSRS
VMNVTLKVDT KALEEVVVVG YGTQKRSDLT GSVSTVKANE IKNLPVRSVN EALQGRAAGV
QVTRNDGSPG ANSDIIIRGA GSIGGMAPLY IVDGIRMSAG NNFNLQDVES IEILKDASAA
AIYGAQAAGG VVLVTTKRGT SMDKMSINLN ANYGVRKPVN LYKLLNTNDY YKAKTAFGVA
TGGWGDPASL PDTDWIDALY SNGVEQSYSL DLSGASAKSN YYISANYQKE GGTIIDNWFK
RYGLRTNSDY KLNSKLKVGE TMYAWMTEIN PTVSATYPFR SAPVVGIYDP SNSYGGWAKT
GSFFGGPNLV GQERQNHMSN QTYAVEGNVY ADWQIIPALS FRATFGASVY NAKNLKFTEA
FDYGIIANRN AFLGRDINNQ RNLTANFVLT YAQTFKQHEI KALAGYEAYK SDLSTLHGEA
QGFPYVTYNL GLTTNPASYV TNGAELPETR LLSQFGRINY TYSGKYLLTA TVRRDGSDRF
GPANKWGVFP SASVGWKLSE EAFLRDNLPA VSNLKLRASY GKLGSTSNIP QYTYQSSYGG
SGGTNAMGLA DGSRSKGYAL TAQLVNENIR WESVLQTDVG VDVGLLRNAL NITLDWYSRQ
TQGMIYRVPV APTAGFGGTS VFTNIGQMSN KGLELAADYR GQKGDFTYSL AINAAYNKNL
VKQLDGNNNN PISDGVAGND LDGNAGRTQV GNPMSQFYGY QVDGIFQSDA EVQSLNERVQ
QAAGSTAVYY QNPGTAAGDL RFRDVNGDGR ITTLDKTFIG NPWPKLTYGL TLNLGWKGIE
LTALLQGMQG VDVYNGNKYY TEYFYGDHTS TRDILNSSFF NGNGLTDQPR VGATSASGAF
TRDPNSNYGR ISSYFVEDGS FLKLRNLQIG YMFSSSQLKA LHMQGLRIYA QGQNLFTLTK
YSGLDPEVLG RNGTTARGID TIFSYPRSML LSMGLSLSF
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