Gene Dfer_2188 details

Gene Information

• Locus tag: Dfer_2188
• ID: 8225760
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dyadobacter fermentans DSM 18053
• Kingdom: Bacteria
• Replicon accession: NC_013037
• Strand: -
• Start bp: 2675693
• End bp: 2679148
• Gene Length: 3456 bp
• Protein Length: 1151 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 644930025
• Product: cytochrome c class I
• Protein accession: YP_003086576
• Protein GI: 255035955
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG2133] Glucose/sorbosone dehydrogenases

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 28
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAACCAGA TGAAGAAACA ATTACGGGGC GCTTTCGTGC TGCTATGCTG TGCATGGCTG 
TTCGCGGGCC AGGTTTTGGC CCAGGCACCC AGGCTGCGCG TGCTGGTGTT CAGCAAAACG 
GCGGCGTTCA GGCACGCGTC GATTGAGGCC GGCCAGAAGG CGCTCACGAA AATGGGTACC 
GAAAAGGGCT TTCAGGCCAT TTTTACGGAA GACGCAGCCC AGTTTAAGGA AAACAACCTG 
AAAAAATACC AGGCCGTGAT TTTCCTCAAT ACTACCGGTG ATATCCTCAA TCCGGAGCAG 
CAAAATGCGT TTGAGCGCTA CATTCAGGCC GGAGGCGGTT ATGTGGGCAT TCACGCAGCC 
AGCGACACGG AATACGAGTG GCCCTGGTAC GGCGCGCTTG CGGGCGCCTG GTTCCTTGAT 
CATCCCATGC CAGATAATGT GCAGAAAGGA AAGTTTATCG TAACGAAAAA GGACCACTGG 
GCTACCCGCG GCATGCCCGA TGAGTTTGAG CGGAGCGACG AGTTTTACAG CTTCAAGAAT 
ATTTCCCCCA AAATCAATGT CGTGCTTGCG ATCGACGAAA AGAGTTACAC CGGCGGTAAA 
AACCCGGATT TTCACCCGAT GAGCTGGTAC CAGGAGTTCG ACGGTGGCCG GTCGTTTTAC 
ACCGCAATGG GCCACACCGA CGAAACATTC GCAGAGCCGC TTTTCCTGAA CCACCTTTGG 
GCGGGCATTC ACTACGCCAT GGGCGGCGAC GCTCCCAAGC CGGTCGATTT CTCGAAGGCG 
CGGCCCGAGG AAAACCGCTT CTCGAAGGTG ATACTGGCCG AAAAGCTGGA CGAGCCAATG 
GAGCTGAGCG TGCTTGGCGA CGGCAGAATC CTGATTATTC AGCGGAAAGG AGAGGTGCGT 
TTGTATAACC TCAAAACCAG GGAGCTTAAA ACGATTGCCA AACTGCCGGT GAGTACGCAT 
TATGTCAGCA AGGAAGGCAA GGAGTCGATG GGCGAGGATG GTTTGCTGGG GTTGAACAAA 
GACCCGAATT TTGCACAAAA TCATTGGATT TACCTCTATT ATTCCGATCC GAACGAGTCG 
AAAAACGTGC TCGCACGCTT CGAACTGAAA GGGGATGAAC TCGATATGTC TTCTCGTAAA 
GTGCTGCTCG ACGTGCCCAC GCAGCGCGAA GAATGCTGCC ACACAGCCGG CTCCATTGCC 
TGGGACAAGG AGGGTAACCT GTACCTTTCG ACTGGCGATA ACACCAATCC GCACGGCTCC 
AGCGGGTACA GCCCGAGCGA TGAGCGCCCC GGCCGCGAGG CGTGGGACGC ACAGAAATCG 
TCGGCGAACA CCAACGACCT GCGCGGAAAG ATTATCCGCA TTAAACCGCA GCCCGACGGC 
ACTCCTTACA CCATTCCGGA AGGCAACCTG TTCCCTCCCG GCACGCCCAA TACACGGCCC 
GAGATTTACA CCATGGGCCA CCGCAACCCC TTCCGCATTT CGGTGGACCA GCGTACCGGC 
TACGTATACT GGGGAGAGGT GGGCCCCGAC GCCGCCAAGC CCGACGCCAA CCGTGGCCCA 
GCCGGTCACG ACGAGGTAGG ACAGGCCCGC AAGGCCGGCA ATTTCGGCTG GCCACATTTT 
GTAGGCGATA ATAAGGCCTA TAACAAATAC GACTTCGCAG CGAGCCGGTC GGGGGAGAAG 
TGGGACGTGG CCGCACCGAC CAACCAGTCG CCCAGCAACA CGGGCCTGAA AGTGCTGCCG 
CCTGCACAGA AGGCATTTAT ATGGTATCCC TACGACGCCT CGCCGGAATT TCCGCTGGTA 
GGGGCGGGCG GGCGCAATGC AATGGCCGGG CCGGTGTTCT ACTCGGACGA TTTCAAGAAT 
GCGCCGGGCG CTTTTCCGGC TTACTACAAT GGCAAGCTGC TGGCGTATGA ATGGATGCGC 
GGCTGGATCA TGGCCGTGAC GATGGATAAA GATGGCAATT ATGCTTCGAT GGAGCGTTTC 
ATGCCCAGCT ATAAGTTTTC CAATCCGATG GATATGGAAT TTGCACAAAA CGGCGATTTA 
TACATGCTTG AATACGGCTC GGGCTGGTTC AGCGCCAACG ACGACGCCCG CCTGATCCGC 
ATTGAATACA ATGGCGGCAA CCGCAAGCCG AAAATCGAAA TGGCCGCCAA TAAGCTGGGC 
GGTTCGGCAC CATTGGCATT GAAACTTACC GCAGAGGGTA CCGACGATGC CGACGGGGAT 
GCATTGACAT ATTCATGGAA AATCACTTCC AAAAACGGTT TTACCAAAAC CATCAACACC 
CGAGACGCAG CGCTGACGCT CACTAAAACC GGCCTCTACA AAGCCGCATT GACCGTGAAC 
GACGGCAAAG GCGGCATTTC CACGCAGTCG CTGGATGTGA CGGTGGGTAA CGAAGCACCG 
GTACTGAGCC TGGATATGCC CGGCGCCAAC AAATCATTTT TCGTAGCCGG AAAGCCTTTT 
CAATATGATG TGAAGGTGAA AGACAAGGAG GACGGCACGC TTGGAAGCGG CATCGACGCG 
GACCGCGTGG CTGTAAACAT CGACTATCTG CCCGAGGGAT TCGACAAGGT GGCGATTGCC 
CGCGGACACC GCTCGGCGGA CGCGGCGGCG CAATTCGCAA CGGGTAAAAA GCTGATCGAA 
GGAAGCGACT GCAAGGCTTG CCATAGCGTA AGCAAAAAGT CGATTGGCCC TGCGTATGCC 
GATGTGGCCC GCAAATACAA AGGCAACAGC TCCGCGTTGG AAACCCTCAC CCGCAAGGTG 
ATCAGCGGCG GTGGCGGCGT TTGGGGCGAA ACCGCCATGG CGGCACACCC GCAACTCTCG 
ACCACCGACG CTTCCGAAAT GGTGAAATAC ATCCTGAGCC TCACCGGCGA CGCCGCGGCC 
AAAGCCTCGC TGCCTGTGAA GGGAAGCTAC ACCGCCGCAT TGCCGAATGG CGACAAAGGC 
AAGGGCGTGT TCGTGGTGCG CGCGGCGTAC GAGGACAATG GGGCGAAAGG CCTGCCCGCG 
CTGCGGTCGG AGCATACATT CGTGCTACGC AATGCGACAA TGGACGTGCA TAGTTTTGAT 
GTGTATGATG ATGTCAACAA AATGTCTTAC GGCGGAAATA ACCTCGCTAT TCCTGCCAAA 
TCGGGCGCTT ACATGGGCTT GAAGCAGGTC GACCTGAACG GCGTATCGGC ATTCCGTATC 
ATGGCCATGG CCCCTAAGCC GCAGCTGAAT GCGGCGGGTG GTAAAATAGA GCTGCGTCTC 
GATAGCCCCA CCGGCAAAGT AATAGGGGAG TCGGAGTTTC TCGAACCGTC CGATAAGCTG 
GATTTCAAAC CATCCACCCT GGATATTCCC GTGAAGCATA CCGCCGACGG CAAGTCTCAC 
GATGTGTATA TGATTTTTGT AAACCCTTCT AAATCATCCG GTAGTCTGAT GGTTGTAATG 
AGTGCACAGG CAGTGCTGGC TTCGGCAGCG CAGTAA 

 

Protein sequence

MNQMKKQLRG AFVLLCCAWL FAGQVLAQAP RLRVLVFSKT AAFRHASIEA GQKALTKMGT 
EKGFQAIFTE DAAQFKENNL KKYQAVIFLN TTGDILNPEQ QNAFERYIQA GGGYVGIHAA 
SDTEYEWPWY GALAGAWFLD HPMPDNVQKG KFIVTKKDHW ATRGMPDEFE RSDEFYSFKN 
ISPKINVVLA IDEKSYTGGK NPDFHPMSWY QEFDGGRSFY TAMGHTDETF AEPLFLNHLW 
AGIHYAMGGD APKPVDFSKA RPEENRFSKV ILAEKLDEPM ELSVLGDGRI LIIQRKGEVR 
LYNLKTRELK TIAKLPVSTH YVSKEGKESM GEDGLLGLNK DPNFAQNHWI YLYYSDPNES 
KNVLARFELK GDELDMSSRK VLLDVPTQRE ECCHTAGSIA WDKEGNLYLS TGDNTNPHGS 
SGYSPSDERP GREAWDAQKS SANTNDLRGK IIRIKPQPDG TPYTIPEGNL FPPGTPNTRP 
EIYTMGHRNP FRISVDQRTG YVYWGEVGPD AAKPDANRGP AGHDEVGQAR KAGNFGWPHF 
VGDNKAYNKY DFAASRSGEK WDVAAPTNQS PSNTGLKVLP PAQKAFIWYP YDASPEFPLV 
GAGGRNAMAG PVFYSDDFKN APGAFPAYYN GKLLAYEWMR GWIMAVTMDK DGNYASMERF 
MPSYKFSNPM DMEFAQNGDL YMLEYGSGWF SANDDARLIR IEYNGGNRKP KIEMAANKLG 
GSAPLALKLT AEGTDDADGD ALTYSWKITS KNGFTKTINT RDAALTLTKT GLYKAALTVN 
DGKGGISTQS LDVTVGNEAP VLSLDMPGAN KSFFVAGKPF QYDVKVKDKE DGTLGSGIDA 
DRVAVNIDYL PEGFDKVAIA RGHRSADAAA QFATGKKLIE GSDCKACHSV SKKSIGPAYA 
DVARKYKGNS SALETLTRKV ISGGGGVWGE TAMAAHPQLS TTDASEMVKY ILSLTGDAAA 
KASLPVKGSY TAALPNGDKG KGVFVVRAAY EDNGAKGLPA LRSEHTFVLR NATMDVHSFD 
VYDDVNKMSY GGNNLAIPAK SGAYMGLKQV DLNGVSAFRI MAMAPKPQLN AAGGKIELRL 
DSPTGKVIGE SEFLEPSDKL DFKPSTLDIP VKHTADGKSH DVYMIFVNPS KSSGSLMVVM 
SAQAVLASAA Q