| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2116 |
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| Symbol | |
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| ID | 8225688 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 2580569 |
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| End bp | 2583913 |
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| Gene Length | 3345 bp |
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| Protein Length | 1114 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644929953 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003086504 |
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| Protein GI | 255035883 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.398452 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.942953 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGATAA GCGTCGCGCA ATTGGTAATG TCGGTTTGGC TGGTCGGGAA TGCGTTCGCG
GCTGACGTGC GTGCGCAGGA ACTGCTCAAC AAGCGTATCA GCCTGCAAGC GCAGGACCTG
GAAGTAAAGA AAGTCCTGCA TCAGATCGAG AAGCAGGCCG GCGTGCGGTT TATTTTCAGT
TCCAAAATGA TCCAGTCGGG CCGGAAAGTG ACCATCCAGC AGTCAAACCA GGAGCTTTCG
AAGATTCTGG AAGAGTTTCT CGTGCCGCTG GGGCTTACCT ATGAGGTTTC GGGAAAAAAC
ATCGTGATCC GCCCGTCGGA AACGCCGAAA TGGACCTCGG GAGAACCGGA GGCTTCCATG
AAAGCGGGTT TGCAGGTAGC AAACGAGATT ACTATCAAAG GTCGTGTGAC CGATTCAGAA
AGTAAGGAGC CTTTGCCGGG CGTGAATATT CTTGTAAAGG GTACACAAAC GGGCACGTCC
ACGGACGCCG GTGGTAACTA CTCGCTAGCT GTTGAAAATG CCAATACCGT GCTGATTTAC
AGCTTCGTAG GTTATGAGCC GCAGGAAGTG CAGGTGGGCG CCAGAACGGA GATTAATATT
TCACTCAAAA CGGACCAGAA ATCGCTCGAA GAAGTGCTCG TGGTAGGTTA CGGAACTGTC
AAGAAAAGCG ACGTGACCGG CTCGGTGGCC TCCGTTAAAT CGCAGGAACT AACCGCCTAT
CCGGCGTTAG GCACCGTGCA GGCATTGCAG GGCCGCGCCG CCGGCGTGCA GATCCAGGCC
AACAATGGCG AGCCCGGTTC GTCATTCAAG GTTCGTATCC GCGGGGGAAC ATCCATCAAT
GCAAGCAGCG ACCCGATATA CGTGGTCGAT GGCTTCGTGG GCGGTACATT GCCGCCGCCG
GAGGATATCG AGTCCATTGA AATTCTTAAA GATGCTTCGG CCACAGCCAT TTACGGTTCA
CGCGGCGCCA ACGGCGTGAT CATGGTAACC ACGAAAAAAG GGACATCGGG CAAGCCAAGA
ATCGATTTTA ATACCTCGTT TTCCAGTCAG AAGGAGATCA ACCGGCTCGA TCTGCTGAAT
GCCTCGCAGT TCCTCGATTA TGTTCAGGAA ATCAGACCGA ACATCGTGTC GCAAGGCGCG
GATACCGACT GGCAGGAAGA AGTTTTCCGC CGCGGGGGCA TTCAAAACCA CCAGCTGTCG
GTAGCAGGCG GCAGCGAGGC GGTGAAATAC TACGTTTCTG GCGCCTATTA CGACCAAAAG
GGCGTGATCC TGAACTCGGG ATACAAGCGT TATTCGATTA CGAGCAATAT CGATATCAAT
GCTACGAAGC GCCTCAAACT GGGCCTTAAC CTTTTCGCAC AGCGCGTGTC GCGCGAGCAG
TCACGTACGC AGGAAGGCTC CGGCGGGCTC ACGCCCGGAG TGATGTCGGC CGCATTGAAA
TTCGAGCCCG ACCAGCCGAT CCGCGACGCT AACGGCCGCT TTACGGTGGC TCGCCTGAGT
GACCCGATCG ATAACCCGTA CGCCATCGCC ACCCAGCTTC AGAACGAAAC ACTGGCCGAC
CGTATCCAGG GTAACCTTTA TGCCGAATAC AGCATTCTGA AAGACCTGAA ATTCAGGATT
ACGCTCGGTG CCACCACCAA CAGCAGCCGC AGGGGCGCAT TCACGCCCAC CACGCTGAAC
GACGGCCGTA ATGTGGGCGG AGCGGCCACC GTGGATGGCA ATAAGAGCAC ATTGCTGTTG
AATGAAAATT ACCTGACCTA CAATAAAAAG ATAGGTGCAT TACACGATTT CTCGGCGATG
GCGGGCTATT CGTACCAGAA ATCGTCCAGC GAAAACTGGG GCGGCTCGGG GCAATCGTTC
ATTACCGATG CGGTTTCGTT CTGGAACCTG GGCGGGTCGT CCGTTTGGCA AAGTCCTACT
TCGGGTCTGA CCGAATGGGT TTTGGCTTCC TATTATGCAC GTCTGACGTA TTCCCTGGCC
GACAAATACC TTTTCACGGC CAACATCCGC CAGGACGGTT CATCGAATTT CAGCAAAAAC
CACAAATGGG CCACGTTCCC TTCCGGCGCA TTTGCCTGGA AAATGTCGAG CGAGCCGTTC
ATGCAAAACC TGTCGGCGAT CAGCCAGTGG AAATGGCGCG TCAGCTATGG TTTAACGGGT
AACCAAGCCA TTGAGCCTTA CCAAACCATG GCCCGCTTCT CGAACGTGTA TGCGATCATA
AACGGAACGC CCGTGAACGC CGTGCGCCCG ACCACCGTCG CCAACGACGA CCTTACCTGG
GAAACAACCC ACCAGTTCGA TGTGGGTGCG GATGTGAGCC TTTTCAATAA CCGCATCAAC
CTCGTGGCCG ACTACTACCG CCGCGTAACC AAAGACCTGC TGTTCAGCGT GCAATTGCCT
CAGTATTCGG GTTATACCAA CCAATTACAG AATATCGGGG AAGTGGAAAA CAAAGGTTTT
GAATTTACAT TGAACACCCG AAACCTGGTA GGCGCATTCA AATGGAATAC TGACATCAAT
TTCTCACTGA ACCGCAACAA AATCCTGAAA CTGCCCGCAG GTACGGACAT CCTGTACGGC
TCCGCGCCGG GGCACATGGT GGGTATGGGA CAAACCCAGG TGCTGCGCGA AGGACATTCT
GTGGGAAGCT TTTATGGCTG GATTTATGAC GGCGTGTACC AGCAGGGCGA TAGTTTCGTC
CCCGGCGGCG GTTTTGAAGT AGTGGCCGGA GGCGAAAAAT TCAGGGATAT CAATGGGAAG
AAAGATGCCA ACGGACAGCT CACCGGCGAA CCCGACGGCA TGCTCAACAG CGACGACCGC
ACGATCATCG GCAATCCGCA CCCGAAATTT ACCTGGGGCA TGAACAACGA TTTCAGCTGG
AAAGGCTTTG ACCTGAACAT ATTCTTCCAG GCTTCGAAAG GGAACGACGT GCTGAGCTAC
ACGCTCATGG AACTGAACCT GCTTTCGGGG ATCAACAATG CTACCACCGA GGCGCTGAAC
CGCTGGACGC CCACCAATAC CAACACCAAC GTGCCCAAAG CCGCCACAGG CCGCACGCGC
CGCGTTTCCA CGCGCTGGGT GATGGATGGA AGCTTTATCC GGATGAAAAA CCTTGCCGTG
GGTTACAATC TTCCGAAACC GGTACTGGAA AAACTCAGGA TCAGCAAGCT GCGCATTTAC
GCCAGTGCCC AGAACATCCT GACTTTCACC GACTACAAAG GCTACGACCC GGAGGTGAAC
TACACATCGG AGAACAACAC CGACAGCAAC CGTAACCTCG GTCTCGATTA CGGAAGCTAC
CCCAACGCAA AGTCGTACAC CATCGGATTG AACCTCGGTT TTTAA
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| Protein sequence | MRISVAQLVM SVWLVGNAFA ADVRAQELLN KRISLQAQDL EVKKVLHQIE KQAGVRFIFS
SKMIQSGRKV TIQQSNQELS KILEEFLVPL GLTYEVSGKN IVIRPSETPK WTSGEPEASM
KAGLQVANEI TIKGRVTDSE SKEPLPGVNI LVKGTQTGTS TDAGGNYSLA VENANTVLIY
SFVGYEPQEV QVGARTEINI SLKTDQKSLE EVLVVGYGTV KKSDVTGSVA SVKSQELTAY
PALGTVQALQ GRAAGVQIQA NNGEPGSSFK VRIRGGTSIN ASSDPIYVVD GFVGGTLPPP
EDIESIEILK DASATAIYGS RGANGVIMVT TKKGTSGKPR IDFNTSFSSQ KEINRLDLLN
ASQFLDYVQE IRPNIVSQGA DTDWQEEVFR RGGIQNHQLS VAGGSEAVKY YVSGAYYDQK
GVILNSGYKR YSITSNIDIN ATKRLKLGLN LFAQRVSREQ SRTQEGSGGL TPGVMSAALK
FEPDQPIRDA NGRFTVARLS DPIDNPYAIA TQLQNETLAD RIQGNLYAEY SILKDLKFRI
TLGATTNSSR RGAFTPTTLN DGRNVGGAAT VDGNKSTLLL NENYLTYNKK IGALHDFSAM
AGYSYQKSSS ENWGGSGQSF ITDAVSFWNL GGSSVWQSPT SGLTEWVLAS YYARLTYSLA
DKYLFTANIR QDGSSNFSKN HKWATFPSGA FAWKMSSEPF MQNLSAISQW KWRVSYGLTG
NQAIEPYQTM ARFSNVYAII NGTPVNAVRP TTVANDDLTW ETTHQFDVGA DVSLFNNRIN
LVADYYRRVT KDLLFSVQLP QYSGYTNQLQ NIGEVENKGF EFTLNTRNLV GAFKWNTDIN
FSLNRNKILK LPAGTDILYG SAPGHMVGMG QTQVLREGHS VGSFYGWIYD GVYQQGDSFV
PGGGFEVVAG GEKFRDINGK KDANGQLTGE PDGMLNSDDR TIIGNPHPKF TWGMNNDFSW
KGFDLNIFFQ ASKGNDVLSY TLMELNLLSG INNATTEALN RWTPTNTNTN VPKAATGRTR
RVSTRWVMDG SFIRMKNLAV GYNLPKPVLE KLRISKLRIY ASAQNILTFT DYKGYDPEVN
YTSENNTDSN RNLGLDYGSY PNAKSYTIGL NLGF
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