| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2115 |
|---|
| Symbol | |
|---|
| ID | 8225687 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 2579029 |
|---|
| End bp | 2580555 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644929952 |
|---|
| Product | RagB/SusD domain protein |
|---|
| Protein accession | YP_003086503 |
|---|
| Protein GI | 255035882 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.103234 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.67321 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAATGA AGCATTTATT TAATAAACCA ATATTCCTTA CGGTGGCGCT TTCCACGCTG
CTGGGCTGCG CCGACCTGGA TGAAAAGCCG GTGGGGCTAC TCGCACCGGA AGCGCTGTTC
AGGACATCGA GAGACGTGGA AACGGCCATT ATGGGTGCAT ATGGATGGAT CGCCACCGAA
CGGCTCTATG GCCGCCAGTT CGTATCCGCA TTGATGCTGC GAAGCGATAT GGAGGACATC
GGCGACCGTG GAACGCCCGC CGAGCGCCAG CAGGTGAACG ATTTCAATAT GGACGATAAC
AACAACATGG TCAACCAGTT CTGGCCGGTT TGGTACCAGG TTGTGAGCGC TACGAATGCG
GCCATTTTTG GTGCGCAGCA ACTGGGCCTG CCCGAGGCGA CCGGCAACCC GCTCATTGCC
GAGGCGCGTT TCATCCGTGG GTTCGCCTAT TTCAACCTCG TGCAGGTGTT CGGCGACATT
CCGTACATCG ACTATTTTAT CAGCAATCCC GAATCCGTCA AATCCATTTC CAAAACGCCG
GCGGCCACCG TGTACGCCAG CATCATTGCC GACCTGGAAT TTGCCAAGCA ATGGCTGCCC
GACAAGCAGT CGGCGGAGGT CCGGAGCCGC GCCAGCAAGG GAACGGCCGC GTCCTACCTC
GCCTCGGTGT ACCTCACGAT GGGCCAGTAT CAAAAGGCCT ATGCCGAAGC CAAATGGGTG
ATTGATAACA AAGACAAATT CGGCTACGGG CTGGAAGCGG ATTTTCAGAC GCTTTTCAGG
GCGCCGCAAG TGCCGAATAT GAAGGAACAC ATCTTCGCTA TCGACTTTCT GGGCCTGAAA
TCGGGTGAAG GCGGTGCCAA CGACGATATT ATGGCACCCA TGACGGGCGT TCGCGGAGGC
GATGCGCCGC GCAGCGGATG GAGCGTGATC GTGCCTTCGC TCAAAGTGTA CAGCACCTGG
GACAATCGCG ATTACCGCAA AGAAGTGAGT TTTGAGGACT CGCTGCTGAT CGGCGGCAAG
CTGGTTCCCT ACACCGAGTT CCCGAACACA AAACGCCCGC ATATCGCCAA ATACGCCCGT
TTTGCAGGTA ATTCCAATTC CGAAGGCCGC TATTCCGACC ATAATTACGC TGCAATGCGC
TATGCCGAAA TCCTCCTGAT CGCTGCCGAG GCTTCCGTGG AAGTGAACGG CCCGAATGCG
GAGGCGCTGG GGTATATCAA CCAGGTGCGG GCGAGGGCCA GAAACTGGGC CGGCAGACCG
ACGACGTTCC CGGAAGACGT GAAAGCAGGC CTCGCCAAAG ACGCGATGAT CGACCTGATC
CTCGACGAAC GCCGCCTTGA ACTCGCATTC GAATACAAAC GCTGGTTCGA TATCAAACGG
CGGAACCTGG GCGAAAAGGT TTTCAAAGGT CCCAATTCGC TGGAACCGCA CGAGAATTTC
GATGCCAACC GGGATTACCT GATGCCGATT CCGCGCGTGG AGTTGCAGGT AAACCCCAGC
CTGGCCCCTC AGAACCCGGG CTATTGA
|
|---|
| Protein sequence | MIMKHLFNKP IFLTVALSTL LGCADLDEKP VGLLAPEALF RTSRDVETAI MGAYGWIATE
RLYGRQFVSA LMLRSDMEDI GDRGTPAERQ QVNDFNMDDN NNMVNQFWPV WYQVVSATNA
AIFGAQQLGL PEATGNPLIA EARFIRGFAY FNLVQVFGDI PYIDYFISNP ESVKSISKTP
AATVYASIIA DLEFAKQWLP DKQSAEVRSR ASKGTAASYL ASVYLTMGQY QKAYAEAKWV
IDNKDKFGYG LEADFQTLFR APQVPNMKEH IFAIDFLGLK SGEGGANDDI MAPMTGVRGG
DAPRSGWSVI VPSLKVYSTW DNRDYRKEVS FEDSLLIGGK LVPYTEFPNT KRPHIAKYAR
FAGNSNSEGR YSDHNYAAMR YAEILLIAAE ASVEVNGPNA EALGYINQVR ARARNWAGRP
TTFPEDVKAG LAKDAMIDLI LDERRLELAF EYKRWFDIKR RNLGEKVFKG PNSLEPHENF
DANRDYLMPI PRVELQVNPS LAPQNPGY
|
|---|
| |