| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_2104 |
|---|
| Symbol | |
|---|
| ID | 8225676 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 2567454 |
|---|
| End bp | 2568350 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644929941 |
|---|
| Product | transcriptional regulator, AraC family |
|---|
| Protein accession | YP_003086492 |
|---|
| Protein GI | 255035871 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.244646 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAAAA GCAGAGGCTT CGACGGCGAG CTGATCATCG AAATACCCAA AGTAGCGACT
TCCCACTGCG AGCAATTGCC GCTGATCAGC CATTTGTTCA TTTCAAGAAT GGGTTATTAT
CCCAAAGCAT TGCACCATTA TTACCAGCGC CCTAACGGCA TTTCGCAGGC TATCCTGCTG
TATTGTACTG ATGGACAGGG CTGGATCGAA CTGGGCGGAA ACCAGCTGCA CGTACGCGCG
GGCGAGGTCA TTCTGCTGCC TACTGAGCTG CCCCATGCCT ATGGCGCCGA CACCCAAAAC
CCGTGGAGCA TTTACTGGAT GCACATCGCC GGCGACCATT CCGATGCGGC CGTGGCGGCG
GTAATGGACC GCGACGGCGA ACCCGCCCGA GCCGTTCACG TAGGGTTTTC CGACGAGCGA
AATGCGCTTT TCACGCACAT TGCCAGCACA TTACTGAAAG GTTACAGCGC GTCTAACCTG
CTGCAAGCTA ACCTTGCATT GCCGCATTAC CTGTCGTCGT TCATCGCCCC GGAGCATTTC
GGTGCGCAAA AGCCCTCCGC AGGCGCCGGC AGCCCTACCG AGAAAGCGAT TTTATACATG
CAGGAAAATC TTTCCAATTC CCTTTCGCTG GATAATATTG CCCGTTCGGT AAATTTATCG
GTCTCATTTT TTTCCCGGAG ATTCAAGAAA GATACCGGCT ACGCGCCCAT CGAATACTTC
AACTATCTTC GAATCCAGAA GGCCTGCCAG CTGCTGCATT TCAGCACATG GCGGATCAAT
GAAGTGGCTT CCGCCATCGG TATTGACGAT CCATTTTACT TTTCGAGGCT TTTCAAGCAG
CAAATGGGCC TGTCGCCGGC GCATTACCGA AAAAACAAGG ACATACCGCG ACAGTGA
|
|---|
| Protein sequence | MRKSRGFDGE LIIEIPKVAT SHCEQLPLIS HLFISRMGYY PKALHHYYQR PNGISQAILL
YCTDGQGWIE LGGNQLHVRA GEVILLPTEL PHAYGADTQN PWSIYWMHIA GDHSDAAVAA
VMDRDGEPAR AVHVGFSDER NALFTHIAST LLKGYSASNL LQANLALPHY LSSFIAPEHF
GAQKPSAGAG SPTEKAILYM QENLSNSLSL DNIARSVNLS VSFFSRRFKK DTGYAPIEYF
NYLRIQKACQ LLHFSTWRIN EVASAIGIDD PFYFSRLFKQ QMGLSPAHYR KNKDIPRQ
|
|---|
| |