Gene Dfer_2019 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_2019 
Symbol 
ID8225591 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp2460578 
End bp2462152 
Gene Length1575 bp 
Protein Length524 aa 
Translation table11 
GC content53% 
IMG OID644929856 
Productdrug resistance transporter, EmrB/QacA subfamily 
Protein accessionYP_003086407 
Protein GI255035786 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAATTAC AGGAATCACT GGTCGAATAC GGCTACCGCC GGGTAATTAT TACCATCACG 
GCTGTATTGT GTGCGCTGCT GGAAATCGTG GATACCACCA TCGTGAACGT GGCGCTCAAC
GACATGCGGG GAAACCTGGG CGGTACGTTG TCGGAAGTGA GCTGGGTGAT AACCGCCTAC
GCGATCGGTA ACGTGATCAT CGTGCCGATG ACGAGCTGGC TATCGCAGCA GTTCGGCCGC
CGCAATTATT TCGCCGCTTC CATCATCATC TTTACAGTGG CCTCATTTCT TTGCGGTAAT
GCCGATAATA TCTGGGAGCT GGTGTTTTTC AGGCTGATAC AAGGTTTCGG TGGTGGCGCA
TTGCTCGTAA CTGCCCAAAC GCTGATTACG GAGAGTTACC CGCCGGAAAA ACGCGGTATC
GCGCAGGCCA TTTACGGTTT GGGCGTGATC GTAGGCCCCA CGCTGGGCCC GCCGCTGGGT
GGCTATATTG TTGATAATTA CAGCTGGCCT TACATTTTTT ATATCAATAT CCCGCTGGGT
ATCATCGCGG CTATGCTGAC CCTGGAATTT GTAAGAAGCC CTAAATTCTC TGCCAAAAAA
GCAGCCAATG AAATCGACTG GTGGGGCATT ATCTTCCTGG CCGTCGCCGT AGGATCATTG
CAATATGTGC TTGAAAAAGG GCAGGAGGAA GACTGGTTCA ACGACGAAAT CATCACGATC
CTTACGGTAA CCAGTGTGTT CTCATTTTTC TTCTTCATCT GGCGCGAATG GACTTATAAA
AACCCGATCG TGAACCTCCG CGTGCTTGCC AACGGTAACC TGCGGGTAGG AACGATACTC
TCTTTCATTC TCGGCTTCGG CTTGTACGGC TCCACATTCG TGATCCCGCT GTACACCCAG
GCGACGCTGG GCTGGACGGC CACGCAGTCG GGGATGCTCA TGGTACCCGC GGCGATTGTG
ACGGCGATGA TGATGCCGAT CGTGGGACAG CTACTGCAAC GCGGGGTAAA ACAGCAATAT
CTCGTGGCGA TCGGAATGAT ATTCTTCTTC ATTTACAGCT ACTGGGGCTA CCTGATCCTG
ACGCCCGACA CCGGCAAAGA CGCGTTTTTC AACATGCTGA TCGTCCGCGG AATCGGTTTG
GGACTGCTTT TCGTGCCCAT TACCACTCTG GCCTTATCGA CCCTCAAAGG CCGTGAAATC
GGTGAAGGAG CCGCATTCAC CGGGATGATG CGGCAGCTCG GCGGCTCGTT CGGGGTGGCG
GTAATCACGA CATTCATTGC CCGCCAGAAC ATGGCCCACC GCAACGACCT GGTGAGTAAG
CTGGACGTGA ATAACCCCAT TGTGCAGCAA CGGGTGGAAG GCTTGCAGCA CAGCTTTATG
GCGAAAGGCA TGACGCCGGA TGTCGCGCTG AACAGCGGCT ACAAAATATT GGATTATACG
GTATCCAAGC AAGCGCAGGT AATGTCATAC ATGGATGTGT TCCTCTACCT GGGCGTGATG
TTCTTGATTT GTGTTCCCTT TGTGTTATGG ACGCGGAGCG GCAAAACGAA AGTCGACGCT
TCGTCCGTGC ACTAG
 
Protein sequence
MELQESLVEY GYRRVIITIT AVLCALLEIV DTTIVNVALN DMRGNLGGTL SEVSWVITAY 
AIGNVIIVPM TSWLSQQFGR RNYFAASIII FTVASFLCGN ADNIWELVFF RLIQGFGGGA
LLVTAQTLIT ESYPPEKRGI AQAIYGLGVI VGPTLGPPLG GYIVDNYSWP YIFYINIPLG
IIAAMLTLEF VRSPKFSAKK AANEIDWWGI IFLAVAVGSL QYVLEKGQEE DWFNDEIITI
LTVTSVFSFF FFIWREWTYK NPIVNLRVLA NGNLRVGTIL SFILGFGLYG STFVIPLYTQ
ATLGWTATQS GMLMVPAAIV TAMMMPIVGQ LLQRGVKQQY LVAIGMIFFF IYSYWGYLIL
TPDTGKDAFF NMLIVRGIGL GLLFVPITTL ALSTLKGREI GEGAAFTGMM RQLGGSFGVA
VITTFIARQN MAHRNDLVSK LDVNNPIVQQ RVEGLQHSFM AKGMTPDVAL NSGYKILDYT
VSKQAQVMSY MDVFLYLGVM FLICVPFVLW TRSGKTKVDA SSVH