Gene Dfer_2005 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_2005 
Symbol 
ID8225577 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp2446909 
End bp2448540 
Gene Length1632 bp 
Protein Length543 aa 
Translation table11 
GC content57% 
IMG OID644929842 
ProductFAD dependent oxidoreductase 
Protein accessionYP_003086393 
Protein GI255035772 
COG category[C] Energy production and conversion 
COG ID[COG0578] Glycerol-3-phosphate dehydrogenase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.758416 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.433601 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCGCA CCACATCACT TGCCAGGTTA CAAAATGAAA TGTTCGATAT CGTCATCATC 
GGAGCAGGTG CCAGCGGGGC CGGGTGTGCC CTGGATGCGG TTCTGAGGGG ATATAAGGTG
GCGTTGATCG ACAAAAAGGA CTTTGCTTCG GAAACTTCCT CCCGCTCCAC CAAGCTCATT
CACGGGGGCG TCCGCTACCT CGAACAGGCA TTCAAGAAAC TCGATTTCGC ACAGCTCAAA
CAGGTTCGGC ACGGATTGGA AGAACGGCAC ATTGTGTTGA AAAATGCGCC GCACCTCGCC
CGGCCGCTCG CATTGATGAC GCCCGTCAGT TCGTGGTTCG AAGGTTTGTA TTTTAAAATA
GGACTGTCGC TGTACGACAC GTTCGCTACC AACGACACAC TCCCGAAAAG CAAGTGGCTC
AATAAGAAAG AAGTACTGGA AAAAATTCCG ACGCTCGACC GCCAAAAGCT GCACAGCGGT
GTGCTTTACT ATGACGGACA GCTGGATGAT GCCCGCTACT GCCTCGCATT GGCACAATCG
GCCTCGGAGA ATGGTGCTGC GGTAGCGAAT TATGTGCAGG TCACCGGTTT TGGTAAAGAC
GAAAACGGTA AACTCAATGC CGTGAACGCG ACGGACGCAC TCAACGGCGA CGCGCTGACC
ATCCGCGCGA AACTGGTGAT CAACTGCACC GGCCCGTTTT CAGACCACGT CAGGCTGATG
GCCAATGCCG CGTTGAGTGA GCGCCTGCGG CCCAGCAAAG GCGTCCATTT ATCATTGCCC
TACAGTACAT TAAACAGCGA ATACGCGATG CTGATCCCGA AAACCTCGGA CGGCCGCGTC
GTGTTTGCGA TACCGTTCGA AGGTGCGACG ATGATCGGCA CCACTGATAC CGAATGCGAT
GAGATTGCCC GCGAGCCGAC GCTCAACCAC AAGGAACGCG AATACCTCGC CGCTACATTG
AATCCTTACC TGGCCAAACC CATCGACCCG GCGCAGATCA GGGCGGGCTT CGGCGGATTG
CGGCCGCTGC TGGCGACCGA TCCGACGAAA TCGACCAAGA GCCTCGTGCG TGACCATGAG
GTGGAAATCG ATGAACAATC GGGGCTTATC AGTTTGCTGG GCGGCAAATG GACAACCTAC
CGCCTCATGG CAAAAGATAC CCTCGACGAG GCCGATAAAG TGCTGGGCCA AAGCCGTGAA
TGCAAGACAG CCGACTACAT TCTGGCCGGC GGTGAAAACT ATGGCGCGGG CAGCTGGCAG
GACCTGAATG CGCAATTTGG ACTGGCCGCG GACATTGCCC GGCACCTGGT GTCGAAATAC
GGCTCGCGTG CGCACCAGGT GGCGTCGCTT GTGCAGGAGG ATGCGCAGCT CGCCGAAAGA
CTCAGCCCGG CTTATCCCTA TATTCGTGCG GAGGTGGTAT TTACCGTCCG GAATGAGATG
GTGGTGACCC CCCGCGACTT CCTCGCCCGC CGCATCCGCC TCGAAATTAC CGACTGGGAC
GAAACCTTAA ACTCCCTGCC CGTTGTTGCT GATCTGATGG CGCACGAACT GGGTTGGACC
GAAGCGGAAA AGACAAGGTA TGCCGACGCG TACGCCAGCG AAATCGGGCA GTTCATGGCC
GACGCCCGAT AA
 
Protein sequence
MNRTTSLARL QNEMFDIVII GAGASGAGCA LDAVLRGYKV ALIDKKDFAS ETSSRSTKLI 
HGGVRYLEQA FKKLDFAQLK QVRHGLEERH IVLKNAPHLA RPLALMTPVS SWFEGLYFKI
GLSLYDTFAT NDTLPKSKWL NKKEVLEKIP TLDRQKLHSG VLYYDGQLDD ARYCLALAQS
ASENGAAVAN YVQVTGFGKD ENGKLNAVNA TDALNGDALT IRAKLVINCT GPFSDHVRLM
ANAALSERLR PSKGVHLSLP YSTLNSEYAM LIPKTSDGRV VFAIPFEGAT MIGTTDTECD
EIAREPTLNH KEREYLAATL NPYLAKPIDP AQIRAGFGGL RPLLATDPTK STKSLVRDHE
VEIDEQSGLI SLLGGKWTTY RLMAKDTLDE ADKVLGQSRE CKTADYILAG GENYGAGSWQ
DLNAQFGLAA DIARHLVSKY GSRAHQVASL VQEDAQLAER LSPAYPYIRA EVVFTVRNEM
VVTPRDFLAR RIRLEITDWD ETLNSLPVVA DLMAHELGWT EAEKTRYADA YASEIGQFMA
DAR