| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1950 |
|---|
| Symbol | |
|---|
| ID | 8225521 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 2386527 |
|---|
| End bp | 2387504 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644929788 |
|---|
| Product | Integrase catalytic region |
|---|
| Protein accession | YP_003086340 |
|---|
| Protein GI | 255035719 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.202643 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACTG ACAGCCTGAG AGCAGAAGCA AGGCAGAAAT GGGTTATGCT CTATAGACAG
ATCGGAAACA TATCGGTTGC TGCCAGGAGG TGCGGAATTG CTAGATCTAC GTTACAACGT
TGGATAAAAC GTGAGGATGA AAATCTCTTT ACAGATCGGT CTCACCGTCC GCATCGGCTG
GGGCGACAAA AGTATCGTCC TGAAGACGAG GCCCTCGTAC TTAAGGTACG CGATGAATTC
AAGTATGGAA AACTCAGAAT CTGCTCTCAT CTGTTCAGGC TCCATGATTT GAAGATTTCA
ACTTCTACCG TAGCGAGAAT ACTCGAAAAG CATTCAGTTG CACCTATTCG TCGATTTACT
AAACATTCCC CTCCAATTCG ATATGCTAAG CTCGTTCCTG GCGAACGTGT ACAGTTAGAT
GTCTGCAAGA TCAGAGCTGG CCTGTATCAA TACACGGCGA TTGATGATTG TACCCGCCTA
AGGGTGTTGA AACTTTACAC GCGTCGGTCG GCCGCCAATT CAATCGATTT TCTGGACAAG
CTTATTGATG AATTTCATTA CCCCATTCAA CGTATTCAAA CGGACAGAGG ACAGGAGTTT
TTTGCGGTCG CATTTCAGCA GAAGTTGATG GATTACTGCA TCAAGTTTCG TCCCATAAAA
CCCAGGTCAC CACATTTAAA CGGCAAAGTT GAACGAAGCC AGCAGACAGA TCTCCAGGAA
TTTTACACAA CAGTTGACTT ACGAGACCCC CAATTGGACG ACAAACTCGC TCAATGGCAA
TTTCACTACA ATTACTTCCG CCCACACAGC TCGTTGGGCG GTAAGACTCC GATCGAATTT
GCCTCCGAAC ACTCTGCTAA GGCACCTTTC TGGGACGAAA TCGAGGCCAT ATACGACGAA
ACAAAGGAAC GCATTAGAGA ACAAGCCTAC TGGCGAGACC TGCGGATGGC AAAGTTGACT
AAGAAAAGCA AAACATAG
|
|---|
| Protein sequence | MATDSLRAEA RQKWVMLYRQ IGNISVAARR CGIARSTLQR WIKREDENLF TDRSHRPHRL
GRQKYRPEDE ALVLKVRDEF KYGKLRICSH LFRLHDLKIS TSTVARILEK HSVAPIRRFT
KHSPPIRYAK LVPGERVQLD VCKIRAGLYQ YTAIDDCTRL RVLKLYTRRS AANSIDFLDK
LIDEFHYPIQ RIQTDRGQEF FAVAFQQKLM DYCIKFRPIK PRSPHLNGKV ERSQQTDLQE
FYTTVDLRDP QLDDKLAQWQ FHYNYFRPHS SLGGKTPIEF ASEHSAKAPF WDEIEAIYDE
TKERIREQAY WRDLRMAKLT KKSKT
|
|---|
| |