Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_1905 |
Symbol | |
ID | 8225476 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 2341854 |
End bp | 2345066 |
Gene Length | 3213 bp |
Protein Length | 1070 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 644929752 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003086304 |
Protein GI | 255035683 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAAAGG AAATATTACT ACATCTTTTT CACCGGAAGC CCTGTTTATT ATTTTTATTG ATTTGCTTTT GTATACCTGC TGCATTCTCT CAAACGGCAG TTCGGGTTTC GGGGAAAATT GTTGACGAAA AAAACGAAGC GCTGCCGGGA GTGAATATTC AGGTGAAAGG GACCACTACC GGCGCAAGCA CGGATGCGGA CGGAAATTAC ACCGTAAGCG CCGCCCCCGG ATCTTCCCTG ATATTCTCTT TTATAGGTTA CCAGAGTCAG GAAATACCGA TAGGCAATAG CTCGGAGGTG AATGTGACAT TGAAGGCAGA CGTGGCGGTG TTGCAGGAAG TGCTGGTGAC GGGATACGGT GTGCAGTCGA GGGAAACGCT CACCACGTCT ATCTCAAAAC TCGACACGAA GGTGCTTGAA AATGTTCCTT TTGCCAATGC CGCCTCGGCT TTGCAGGGAA CCGTTTCCGG CGTGCGGGTC CAAAGTACGT CCGGCCAGCC CGGTGCGGCT CCGCGCGTGA TCGTACGGGG CGGAACCTCT ATCAATAATC CCAACGGGGC CAGTCCGCTA TATATCATCG ACGGGGTGAT CCGGACTGAT ATGAATGATA TTAATTCGGA TGACATCGCT TCCATGCAGG TGTTAAAAGA TGCGGCTTCC ACCGCCATTT ATGGGGCCAG GGGATCCAAC GGGGTAGTTA TCATCACCAC CAAAACAGGC AAGTCCGGGC AGACGAGGGT CAGTTATTCT TATGACATGA CTACATCCAA GCCTGGTAAA ATGTTCGAGC TTGCCAATGC TCGGGATTAT CTGACCATCA ACAGGCTAGG GGTTTTTGGG GATGCGAAGT TCGGAGATTA TACTTCAAGG CTGACCTTGC CTATGGGTTA CGGAACAGGG AATGACCTGA CCAATAACAC CGCATTTACA ACCCAATACC TGACGCCTGC GAACGAACAT AAATTGCAGG AAGGCTGGCA GAGCATGCCG GATCCGGCGG ATCCTACCAA AACACTGATC TTCCAGGACA CCGATTTTCA AGCATTAAAC TACCAGACGG GCATTTCCCA TAACCATAAC CTGTCCGTTT CCGGCGGTAC TGAAAAAGGA TCATTTAATG CAGGGGTAGG GTATATGACT GCCGACGGGA CTGTAATTAC CACGAAATAT GACCGCCTCA GCTTTAATCT GAACGGGGAT ATCCAGGTAA AGAAAAACCT CACTGTGTTT TCAAAGGTGA TTTTTTCAAG GTCTTCAACG AACACCCCCT ACGGTTCCAC CGCAGTTACT TTCTACCGAA ACGCCGGCCT GGCGCCGACG GCCAAATACA GGTTTGAGGA CGGTACTTTG GCTCCCGGTA CCAACAATGG TATCGGAAAC CCGGAATACC AGATGAATAC CAGGAAGGCC GAGAACTCAA ATGAAAAGCT GACGGTGACG CTGGGTTCGC GCTGGAATAT CCTGCCGGGT TTATCGTTTG AACCGCAGGT ATCACTCTAC AATGTCAATG GAGACGGATA TACGTTTCAG CCGGGATTCT GGAACGGGCC GGTTGCGTTT GTGGATGCAC GTGCAGCCTC TGCTACCAGC AGCAGGTGGC GCCAAACCCA GGCGGACGGT GTTTTTGCAT ACACCAAGTC ATTCAAGGAC CATAACCTCG ACGCAAGGGC AGGGATATCC TATTTCGGAC GTACCACGTC CAGTCTGAGC GCCAGCGGCA GAGGGGCCTC GACCGACCTG ATCCCGACCC TGAATGCTTC TGCAGAAGCA ACCGCAGTCA GCAGTTCAAT CAGCGAACAG CGTATACTGG GGTATTTCGC GAGTGCGAAT TACAATTATC AGATGAAGTA CCTGCTGAGC TTGAATATGC GCTACGATGG TGCTTCCAAT TTGGGCGAGT CGCACAAGTG GGGCTTTTTC CCAGGGGTTT CCTTAGGCTG GAATATGCAC AAGGAAGATT TTTGGGCCGG AATCTCCCGC GGCGTTTCTC AAATGAAACT GAGAGGGAGT TATGGTGAAA ACGGAAATAT CAGCGGATTG GGGGATTTTA CAGCTCAGGG CGCTTACGGC GTGGGATCCA GATACGGAGG AGCTGCCGCA ATCCAGAATA CCGTGATTCC GAATAAGGAT TTGAAATGGG AACAGTCCAG GACTTTCGAC ATAGGTGCGG ACCTCGGTTT CCTGGACAAC CGGCTTACCC TGATCGTGGA CTATTACCGG CGCGTCACCA GCAACCTGCT GACAAGCCTT CCCTTGCCGC AGTCTACCGG GTTTGCCAGC GTGCTTACCA ACCTGGGCAC ACTTGAAAAC AAGGGTTTTG AGATTGAGCT CGGCGCGCGT GTACTTTCCG CTAATTCTCC CTTGCAGTGG AATGTGGCTT TCAATGCCTC CAAAACAAAG AATAAGGTTT TGAAATTGCC CAATAATGGG GTAGAAAACA ACCGTGTCGG CGGTCTGCTG GTGTGGGACG ATGCCCGGCA GGATTATGCC TGGAAAGGCG GAATTCAGGA GGGCCACAGG CTGGGGGAAA TGTACGATAG AAAACAAGTG CGCATTTATC CCACCGATGA AGATGCGAAA AACGGTCCGA TCGCTTCGTA CATCGTAGGT GCGGATAAAA CCCAGTACGG GGGAGACGTT GAATATTACG ATGCGGACAA AAACGGCATT ATCGATTCGA GGGACAAAAG GTATATGGGA AATGCCTATC CCCTGTGGAC GGGAGGGTTC TCAAATACAT TGAGCTACAA GAGTTTCAAT TTGTATGTGC GGCTTGATTA TACCACCGGC CACACGATCT TCAACTGGGG CAGGATGTTC CTGGACGGAA ATATGTATTC CGACGGCAAC CTGACTCAGC GAATGGTAGA GCGCTCCTGG AAAAAGCAGG GCGATATTAC CGATATGCCC AGGTCGTATT GGGGCGGAGA GCGGGTTCAG CGTAACCTGT TCGATGGCGT CACCACCTCA GGCAACTCGA TGTACAACGA GTCCGGCGAC TTTCTGGCCA TTCGGGAGGT GACGCTGAGC TACTCCGTAC CGTCGCGGAT ATTGAACAAG CTGAAACTGG CCAGTTTGAG ATTCAACGTA ACCGCCAACA ACATTCACTA CTTCACCAAA TACCTCGGCC TGAACCCGGA AGAGGGCGGC GTCGACGATG GCCGTTATGC AATGCCTAAA AACATCATTT TCGGAGCCAA TATTTCATTT TGA
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Protein sequence | MQKEILLHLF HRKPCLLFLL ICFCIPAAFS QTAVRVSGKI VDEKNEALPG VNIQVKGTTT GASTDADGNY TVSAAPGSSL IFSFIGYQSQ EIPIGNSSEV NVTLKADVAV LQEVLVTGYG VQSRETLTTS ISKLDTKVLE NVPFANAASA LQGTVSGVRV QSTSGQPGAA PRVIVRGGTS INNPNGASPL YIIDGVIRTD MNDINSDDIA SMQVLKDAAS TAIYGARGSN GVVIITTKTG KSGQTRVSYS YDMTTSKPGK MFELANARDY LTINRLGVFG DAKFGDYTSR LTLPMGYGTG NDLTNNTAFT TQYLTPANEH KLQEGWQSMP DPADPTKTLI FQDTDFQALN YQTGISHNHN LSVSGGTEKG SFNAGVGYMT ADGTVITTKY DRLSFNLNGD IQVKKNLTVF SKVIFSRSST NTPYGSTAVT FYRNAGLAPT AKYRFEDGTL APGTNNGIGN PEYQMNTRKA ENSNEKLTVT LGSRWNILPG LSFEPQVSLY NVNGDGYTFQ PGFWNGPVAF VDARAASATS SRWRQTQADG VFAYTKSFKD HNLDARAGIS YFGRTTSSLS ASGRGASTDL IPTLNASAEA TAVSSSISEQ RILGYFASAN YNYQMKYLLS LNMRYDGASN LGESHKWGFF PGVSLGWNMH KEDFWAGISR GVSQMKLRGS YGENGNISGL GDFTAQGAYG VGSRYGGAAA IQNTVIPNKD LKWEQSRTFD IGADLGFLDN RLTLIVDYYR RVTSNLLTSL PLPQSTGFAS VLTNLGTLEN KGFEIELGAR VLSANSPLQW NVAFNASKTK NKVLKLPNNG VENNRVGGLL VWDDARQDYA WKGGIQEGHR LGEMYDRKQV RIYPTDEDAK NGPIASYIVG ADKTQYGGDV EYYDADKNGI IDSRDKRYMG NAYPLWTGGF SNTLSYKSFN LYVRLDYTTG HTIFNWGRMF LDGNMYSDGN LTQRMVERSW KKQGDITDMP RSYWGGERVQ RNLFDGVTTS GNSMYNESGD FLAIREVTLS YSVPSRILNK LKLASLRFNV TANNIHYFTK YLGLNPEEGG VDDGRYAMPK NIIFGANISF
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