| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1802 |
|---|
| Symbol | |
|---|
| ID | 8225373 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 2215288 |
|---|
| End bp | 2218647 |
|---|
| Gene Length | 3360 bp |
|---|
| Protein Length | 1119 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644929654 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003086206 |
|---|
| Protein GI | 255035585 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAC TGCTTCTACC CATTGTTCCT GTGGTTATCG CCGGTTCTTT GGTGTTCAGT
ACGTTTAATC CGGCCGGCGC GGTACGGCCG GAACGCCCCG GCGCGACGCG TCATGCCGGG
AAGCAAGCGC CGGCGATCCG GGTTACCGGG CGGGTTCTCG ACGACAATGG TGATCCTTTG
CTCGGTGTGA CCGTGGTGGA AAAAGGCAAC AGCGGACGCG GTACCGTGAC GGACGTAAAC
GGCGAATTTG CCATCGAGGT GGAAAACGGT GCCAGTCTGG TCGTATCATT TGTTGGGTTC
ATTGCGCAGG AGGTGGTGGT CTCCGGCGAC AAGCCACTTA ACATACAGTT GAAGCAGGAC
GCGATGATGC TCGACGAGGT CGTAGCCGTG GGTTACCAAA CCCTCCGGAA GAGCGATTTG
ACCGGCGCGG TGTCCAGTGT AAAAGCCAAA GAACTGAACC TCACCACCCC GACCGTAGGC
CAGGCGCTGG TAGGTAAGGT GGCGGGCGTG CAGATCTCGC AGGTAAGCGG CGCGCCCTAT
GTGGGTACCA AAATCCGCGT GCGCGGCGTA GGTTCGATCA ATGCAAGCTC CGATCCGTTG
TATGTTATCG ACGGCTATCC GGCTGGAAAT GATGTATTTA TCAATCCTAA TGACATTGAG
TCCATTGACA TTCTGAAAGA TGCGGCTTCG GCGGCTATCT ATGGCTCCCG CGCGGCGGGT
GGCGTGGTGC TGATCACCAC CAAACGCGGC AAGGAAGGCA AGGGCAAGCT GGAATATGAC
TTCCAGTTCG GCGTGCACCA GCTGGCCAAG AAGGTGGATA TGCTCAATTC GTCTGAATTT
GCGCAGCTGC TGATCGACGG CCGCAACAAT ACTTACCGCG ACCTGATGGT GAATGCAGGC
AAGCCGTGGA ACGACGGCAT GTTCTCCGAC GACAATGCGA CGCGGATCAA AAACCTGGGC
GGCAGCGCGG GGTCGGTGAG CATCCCGACC GACATCTACG ATTTTGCCAA TCAGCGCTTG
ATCACACCGA AATACAACAC CGACTGGCAG GACGAGCTCT ACCGCAATGC GCCCGTGAGC
CGTCATAACA TCAGTTTCAG CGGCGGACAA AAAGGTTTGC GCTACGCGAT CAGCGGCGGT
CATTTGTCCC AGCAGGGTAT CATCGAAAGC ACCAAGCAGG AACGGACAAA CTTCCGCGCG
AACATCGACG CCGACGTAAA CAAACGGTTG AAAGTGGGTG CAAACCTTGC ATTTACCTAC
AATACCAACC GCGAGGTGCA GGAAGGCCGC TTCAACCAGG GCCCGATCCT GGGCGCGCTC
GTGTACATGC CTATTTTCAA GGCTTATAAT GAAGACGGCT CCCTGGCCAA GAACGAGGCG
GCGGCGTTGA GCTCGGGTTT TGGATTGCAA TCCATCGAAA ATCCGGTCGC ACTTGCTACC
GAAACGCATA TCAACCGGAA TGGGCAGCGC GGGACTTACA ATGGCTTTGC TACATTCGAT
ATTGCCAAAG ACCTTGTTTT CAAGGTCAAT CTCGGCTTGC AGACTTACAC CGAAAAGTAC
GAATACTATC GCCCGACCAG TCTGAGCGAT GGTGCCAACC CACCGGGATC GCCGCAGGCC
ATTGCCGCTG CCAATGCATT GGCGCGTACG GTTAGTTTCA TGGACAAGCT CGCTGAGTTT
ACATTGAACT ACAAAAAAGC ATGGGGCAAG CACAACTTCG ACGGATTGCT CGGCTACACG
GCGCAGAAGA ATAACCGCGA CGTGATTTCC GTGACCGCCC GCGGCTTCCA GAACGACCGC
ATCGAAGAGA TCACCGGGAA AGGTGCGGAT GCCATCTATT TCAGTCTGAA TACGGGCAAT
CCCGAAGGCG ACGGAACGGG CAAGACCAAC TGGACGCTCC TCTCCTACCT GGCCCGCGCG
GTTTATAATT TTGACAACAA ATATTACCTC ACCGCCTCTT TCCGTACCGA CGGCTCGTCG
CGTTTCGGCC CGAACAACCG CTGGGGAAGC TTCCCGTCGG TGTCGGCAGG CTGGAACATT
TCCAATGAGC CATTTTACAA TGATTTGCTG GGCAAAGCCT CCACTATGAA GCTGCGTGCC
AGCTGGGGAT TGAGCGGGAA CAACAATATT GGTAACTACA ACTTCCTGCA AACGATGGCC
GCTCCGGGCG GGGTCGTGTT CGGCAACGGA ACGGTGAACA CCGCGCTGTG GGCAGAGGGC
ATCAAGGATC AGAACCTGGG CTGGGAATCG ACATCGCAGT ACAATGTAGG CCTGGACCTG
GGATTGCTCG AAGACCGGCT TTCCATCATT GCCAATTACT ACCTGAGCCG CTCGTACAAC
CTGCTTTTCA ACCAGCCGTT GTCGGCCATT TCCGGCGCTT CTACCATCCT GACCAACCTC
AGGAATTCCA AAGTGCAGAA TACCGGGTTC GATATTCAGG CAGATGCGCG TGTGATCGCC
AAGCGCGATT TCAACCTGAA CATCAGCGGT AACATCTCAC TGAACCGCAA CAAAGTCCTT
GATATGGGCG GTGCCAACAC CATCCTTTCC ACCGGCGCCG AACGCTCGTA CATCACCCAC
ATTACCCAGG AAGGACAGCC GATCGGGATG TTCTATGGCT TTAAGGTGAA GGGCATGGTG
CGCGAGTCGG ATATGGAAAA CCTTGCGGCG GACAATGCAG CCTATAATGC TTCTACGCAA
AAATTCCCCG AAGGCTATGT GCTCAAAGGT CCGGCCCGCT CAACGGCCTC GACCAACCCG
CTTCGTCCCG GCGACCTGTA TTTTGAGGAC ATCAACGGCG ATGGCGTCGT GAATGATGCC
GACAAGCAGG TGATCGGCTC GCCGCATCCG AAATTCACCT ATGGATTTGC GATTTCGGCC
AGCTACAAAA ATTTCGATTT CAGCTCGTCG TTCAATGGCG TTTCGGGCAG CCAGGTGCTG
GACGGCCAGG ATTACTATAT TTTCAATATG GAAGGGTCCG GCAACCAGTA TTCCAAAGTG
CTCAACCGCT ACCGTTCCGA GGCCGAACCC GGCGATGGCA AAGTGTACCG GGCAGCACGC
GGCGGCACGC AGAGCAACAG CACGCGCCTT TCGACCTTTT ACCTGCAAGA CGGCTCTTTC
CTGAGATGTA CCAACCTCAC TTTGGCCTAC AACTTCCCGC AGATTGCGCA GATCAGCAAA
AATGCCATCA GCAACCTGCG GATCTATGTC GGTGTGGATA ATGCATTTAC ATTGACCAAA
TACCTGGGCT ACAACCCGGA GGTGGATTAC AACAACGGCT CCAACCTGAC ACCGGGTGTG
GATTATGGTA AATATCCATT GGCCCGCGCC TACAACATCG GGGCGAGAAT CACTTTCTAA
|
|---|
| Protein sequence | MKKLLLPIVP VVIAGSLVFS TFNPAGAVRP ERPGATRHAG KQAPAIRVTG RVLDDNGDPL
LGVTVVEKGN SGRGTVTDVN GEFAIEVENG ASLVVSFVGF IAQEVVVSGD KPLNIQLKQD
AMMLDEVVAV GYQTLRKSDL TGAVSSVKAK ELNLTTPTVG QALVGKVAGV QISQVSGAPY
VGTKIRVRGV GSINASSDPL YVIDGYPAGN DVFINPNDIE SIDILKDAAS AAIYGSRAAG
GVVLITTKRG KEGKGKLEYD FQFGVHQLAK KVDMLNSSEF AQLLIDGRNN TYRDLMVNAG
KPWNDGMFSD DNATRIKNLG GSAGSVSIPT DIYDFANQRL ITPKYNTDWQ DELYRNAPVS
RHNISFSGGQ KGLRYAISGG HLSQQGIIES TKQERTNFRA NIDADVNKRL KVGANLAFTY
NTNREVQEGR FNQGPILGAL VYMPIFKAYN EDGSLAKNEA AALSSGFGLQ SIENPVALAT
ETHINRNGQR GTYNGFATFD IAKDLVFKVN LGLQTYTEKY EYYRPTSLSD GANPPGSPQA
IAAANALART VSFMDKLAEF TLNYKKAWGK HNFDGLLGYT AQKNNRDVIS VTARGFQNDR
IEEITGKGAD AIYFSLNTGN PEGDGTGKTN WTLLSYLARA VYNFDNKYYL TASFRTDGSS
RFGPNNRWGS FPSVSAGWNI SNEPFYNDLL GKASTMKLRA SWGLSGNNNI GNYNFLQTMA
APGGVVFGNG TVNTALWAEG IKDQNLGWES TSQYNVGLDL GLLEDRLSII ANYYLSRSYN
LLFNQPLSAI SGASTILTNL RNSKVQNTGF DIQADARVIA KRDFNLNISG NISLNRNKVL
DMGGANTILS TGAERSYITH ITQEGQPIGM FYGFKVKGMV RESDMENLAA DNAAYNASTQ
KFPEGYVLKG PARSTASTNP LRPGDLYFED INGDGVVNDA DKQVIGSPHP KFTYGFAISA
SYKNFDFSSS FNGVSGSQVL DGQDYYIFNM EGSGNQYSKV LNRYRSEAEP GDGKVYRAAR
GGTQSNSTRL STFYLQDGSF LRCTNLTLAY NFPQIAQISK NAISNLRIYV GVDNAFTLTK
YLGYNPEVDY NNGSNLTPGV DYGKYPLARA YNIGARITF
|
|---|
| |