| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1778 |
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| Symbol | |
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| ID | 8225349 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 2186488 |
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| End bp | 2189607 |
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| Gene Length | 3120 bp |
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| Protein Length | 1039 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644929631 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003086183 |
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| Protein GI | 255035562 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAAAAA AACTACGATC ACCCCGGATC GACAGATCCT GGCGGGCCTT ATTGCTGGTG
GCAATATTGT CCTCGCTCGG CGCAACCGCC CAAACCCTCA CCGTCAAAGG CAAGGTAACC
TCCCCTGCCG ACCAAACCGG CGCTCCCGGC ATTAATGTGA TACTCAAAAA TACGACAAAC
GGCACCACGA CCAATGCCGA AGGCTCCTAC CAGATAGAGG CCCCCGAAAA GGGCGTGCTG
GTGTTCTCCG GGATCGGCTA CCAAATGGTG GAAATCCCCG TGAGCGGCCG GGCGAGCATT
GATGTGACGC TCACGCCGGA CACGAAGCAG CTGAATGAAG TGGTGGTGGT CGGCTACGGG
ACGCAGAAGA AAAGCGACGT TACCGGCGCT GTGGGCTCGG TGAAGATGGA CCGGGAGATA
AACAGCAGGC CCATTGTGGA AGTCGGGCAG GCGCTGTACG GAAAGATCCC GGGCGTGCAG
GTTTTGTCCA GTAATGGCCG CCCCGGCACC TCCTCAACGA TCCAGATCAG GGGTATCAAT
TCGGTTTCGG CCAGCAGCTC GCCGCTGATC GTGATCGACG GCATGCCGAT CCCGAACTAC
GACCTCAACC TGATCAATGC CAACGATATT GAATCGATGG AAGTGCTCAA AGATGCCTCC
TCGGCCGCCA TTTACGGCTC GCGCGGTGCG AATGGGGTGA TCCTCATGAC CACCAAAAGC
GGGAAGGAAG GCAAGACGCG TTTTAATGTC AATTATTCCT ACGGTATTCA GAAAGTGATC
GACCGGATTG CCGTAATGAA CTCGCGCGAG TACGCGCAGG CCTCCATTGA TGCCGCGCAG
AACGGCTGGA TCGAAAGCGG CGGCGACCCC GCGGCACCGA ACACGATCGA GGCGCGCAAA
CAGTACAAAT ACACCTGGCC CACGGCATTC GACAACCCTG AAAACCTGCA AGATACCGAC
TGGCAGGATG TGGTTTTCCG GACGGCGCCC ATGCAGAAGA TCGAGCTCAA TGCCAATGGC
GGGACGAGCA AGGCCAATTT CATTGTCTCG GCAGGTTATG TGAAGCAAAA AGGCATTGTG
ATCACTTCCG ATTACAAGAA ATACACCTTC AATATCAAGG CCAATGCGCA GGTTAAAAAG
TGGCTGCAAA TCGGCGGGAT GCTGAATGTG AGCTACGACC ACGAGAATGA GCCGTTCAAC
CGGACGGTGG AATGGGCGGT GCAATACCCG ACGATTTACC CGGTGTACGG CAACAACGGC
TACCTGGGCG CTCCCGCCAA CACGCCCGGT TTCGAAAAAT ACGACGCGAT CCTTTTCCGC
CCGAAGAACG GGCACCCGCT CTACCAGATC ACCGACGACA TTCAGCACAG GCAATTTAAT
AACCTCGGCA ATGTGTTCGG GCAGATTGAT CTGCTGCCAG GCCTCCGGTT CAAATCCTCC
CTGAACTTTT TCTATAACCG AATCGACAAC AGCAATTACC AGGCGGTTGA CCATAACCTC
GGCCCGACTT ATTACACCGA GGGCATTATG GGTGTAAACC AGTCGCGGAC ATTAAATTAC
ACCTCCCAAA ACCTCCTTAC CTACGATAAG GCCTTCAAAG ACCACACTTT CTCCGCATTG
GCCGGGATGG AGTATAATAA CAACGAATAT TATTACACCA ACCAGGAGCG CCGCGGCTAT
GACAACGACC TGATCAAGGC TCTCAGCGCG GGAAAAACCG TTTTTCAGGC CGAAGACGAT
AAAAACCGCA GCATCCTGAT CTCCTACTTT TCGAGGCTCA ATTATACCTT CAAAGGCCGG
TATCTGCTCT CGGCCAGCAT CCGCCGCGAC GGCTCATCCC GCTTCGGGCC GAATAACAAA
TGGGGCCTGT TCCCGTCCGT CTCGGGAGGG TGGATCGTTT CGGACGAAAG CTTTTTGAGT
CCGGTCAAGT CGGTGAGCAA CCTCAAACTA CGCGCGAGCT ACGGTTTTAC GGGTAACGAC
CGTTTTGCGG ACTACAAATG GGTCGGCGCG ATGTCGCAGG GAAGGATTGC ATTTGGCAAC
ACCCTGGGCA CCACCTACTA CCCCGGCAGC ATCACCAATC CCGATCTGGA ATGGGAACGC
ACGCAGCAAC TCAATGCCGG GATCGACCTC GGGCTGTTCA ATAACCGCAT TTCTTTGGAA
GCGGATTACT ACATTTCCAA GTCCGACGGA CTGTTGCTGG ACGTGCCCGT GCCCATTGTT
TCAGGTTTTA ACAGTGTATT CAAAAACATT GGCAAGCTGC AAAACAAGGG ATTGGAATTA
AACCTTACCA CACACAACCT CACCGGCGCG CTCACCTGGA CTTCGCAGCT CAACTTCTCC
CGCAACCGTA ATAAGCTGCT CGCATTGGGC AAGGACAACG CGCCGATGAT CTACCAGCCC
GGCTTCGGGA TGGAGTCGAT CAACCAGGTG GGCCAGCCGA TTTTCAGCTT TTACGGCTAC
CAATATGACG GTGTGTACAT GAACCAGTCG CAGATCGACG CCGACCCCGC ACATTATGCC
TCAGCCAAGC CCGGCGACGG CCGGTATGTG GATATCAACG GCGACGGCGT GCTCAATGCG
AAAGACCGCA CGATCATCGG CAACTATGCG CCGGACTTTA TCTGGGGCTT CACCAACAAC
CTCAGCTACA AGGGATTTGA TTTCAGCGTG CTCATCCAGG GCGTGCAGGG CAGCGATGTG
TATGACAACA ACATCCACCG CTCGATGCTT TACCATGAAG GGCGGAACTA CTACAAGGAA
ATGACCAACC GCTGGCGCTC CGAGCAGGAA CCGGGCGACG GCCACCACTA TAAACTGACC
GTGGACCTGG ATGGTTATGA GAAAACGGCT TCTAGCTACT GGATCGTGGA CGGCTCGTAT
TTCAGGGTCA AAAGCCTGAC GCTCGGCTAC ACATTACCCG CTGCGCTCCT GTCGCGGCTC
GGGCTGGAAT CGGTGCGGGT GTATGCCAAC GGGCTGAACC TGTTCACCCA CAAGAATGCG
CCGGTGTTCG ATCCCGAAAA CTTCAACGGC AGCACCACCA GTGCCACCGC GCGCGGCGTG
ACGCACTCGC CCTACCCGTC GGCGAAGACC TACACTTTCG GCATAAACAT TGGCTTTTAA
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| Protein sequence | MLKKLRSPRI DRSWRALLLV AILSSLGATA QTLTVKGKVT SPADQTGAPG INVILKNTTN
GTTTNAEGSY QIEAPEKGVL VFSGIGYQMV EIPVSGRASI DVTLTPDTKQ LNEVVVVGYG
TQKKSDVTGA VGSVKMDREI NSRPIVEVGQ ALYGKIPGVQ VLSSNGRPGT SSTIQIRGIN
SVSASSSPLI VIDGMPIPNY DLNLINANDI ESMEVLKDAS SAAIYGSRGA NGVILMTTKS
GKEGKTRFNV NYSYGIQKVI DRIAVMNSRE YAQASIDAAQ NGWIESGGDP AAPNTIEARK
QYKYTWPTAF DNPENLQDTD WQDVVFRTAP MQKIELNANG GTSKANFIVS AGYVKQKGIV
ITSDYKKYTF NIKANAQVKK WLQIGGMLNV SYDHENEPFN RTVEWAVQYP TIYPVYGNNG
YLGAPANTPG FEKYDAILFR PKNGHPLYQI TDDIQHRQFN NLGNVFGQID LLPGLRFKSS
LNFFYNRIDN SNYQAVDHNL GPTYYTEGIM GVNQSRTLNY TSQNLLTYDK AFKDHTFSAL
AGMEYNNNEY YYTNQERRGY DNDLIKALSA GKTVFQAEDD KNRSILISYF SRLNYTFKGR
YLLSASIRRD GSSRFGPNNK WGLFPSVSGG WIVSDESFLS PVKSVSNLKL RASYGFTGND
RFADYKWVGA MSQGRIAFGN TLGTTYYPGS ITNPDLEWER TQQLNAGIDL GLFNNRISLE
ADYYISKSDG LLLDVPVPIV SGFNSVFKNI GKLQNKGLEL NLTTHNLTGA LTWTSQLNFS
RNRNKLLALG KDNAPMIYQP GFGMESINQV GQPIFSFYGY QYDGVYMNQS QIDADPAHYA
SAKPGDGRYV DINGDGVLNA KDRTIIGNYA PDFIWGFTNN LSYKGFDFSV LIQGVQGSDV
YDNNIHRSML YHEGRNYYKE MTNRWRSEQE PGDGHHYKLT VDLDGYEKTA SSYWIVDGSY
FRVKSLTLGY TLPAALLSRL GLESVRVYAN GLNLFTHKNA PVFDPENFNG STTSATARGV
THSPYPSAKT YTFGINIGF
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