Gene Dfer_1748 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_1748 
Symbol 
ID8225319 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp2135889 
End bp2137541 
Gene Length1653 bp 
Protein Length550 aa 
Translation table11 
GC content56% 
IMG OID644929602 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_003086154 
Protein GI255035533 
COG category[T] Signal transduction mechanisms 
COG ID[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGGCA TTGTTCCGGC TAAGGAATCG GGCCTAGATT CAAATGATAA GCTTCAACTT 
CAAAGCATGG TGGAGAGTGC CCCTTTTCCC ATTGGCGTGT ATGTGGGGCG CGAAATGCGC
ATTGCGCTTG TTAATCAATC CATCATCGAC GTTTGGGGAA AAGGTCCGGA AGTAGTGGGT
AAAACGTACG CCGAAGTGTT GCCCGAGCTC GCGGGAACCG GCATTTACGA ACAAATCCAA
AAAGTATACA CCACCGGCGA GCCCCACCAC GCCAATAACC AGCGCGTAGA CCTGGTTGTC
GACGGCATTT TGCAGGAGTT TTATTTCAAA TACAGCTTTA CCCCGCTTTT CGACGCGCAG
GGAGAGGTGT ATGGTGTAAT GAACACCGCT GCCGACGTGA CTGACCTGGT GCTGGCCCGC
CAGCAGCTCG AATTGGCCCA GACAAGCCTG AAAGGTGCCA TTGACCTCGC CCAGCTCGGC
ACCTGGGAGC TCGACCTGAC TACACGAGCG GTGAGTTATT CGGAAAACAT TCAATCCTGG
TTTGGTTTCG CAAAAGAACG GATCGCGATC GACGACGTAT ACGACCCGAT GCACCCCGAA
GACCGCGACC CCGTAGAGGC GGCGATCAAC CGGGCGATCG CGCCGGGCTC TTCCGGGATT
TTCGATGCGG AGTACCGCCT GGTTCATCCC GATACACGTT CGGAGCGGGT GGTGCATGCG
CGGGGGATTG TGGTATCGAA TGCCGAGGGC AAGCCCTATA AATTGCTGGG AACGGCCCAG
GATGTGACCG CCGAGCGCCA CAGGCAGCAG GATCTGGAGC GGCTCGTGCA GGAGCGGACC
ACAGAGCTGG AAGCCCTCAA CGAAGAACTT GCCGCACAAA ATGAGGAATA TATGGTTGTA
AATGAAGAGC TCGAAGAAGC CAACCGCCTT CTGTTGCGCT CGAATGAAAA CCTCGAACAA
TTTGCGTACG CAGCCGGCCA CGATTTGCAG GAGCCGCTGC GCAAAATACG GCAGTTCAGC
GCGTTACTGA CATCCCATAT ACCCGGCGCG GCCGGAAACG ACGCCAGGTA CATTGAGCGG
ATCAATGCCG CAGCGGGAAG AATGTCCACA TTGATCAACG ACCTGCTGGA ATTTTCCAAC
ATCACAACCG GCCAGGCGCG CATCGAGCCG GTGGAATTGA ATGCGGTGAT CGACACCATA
CTGCTCGACC TGGACCTCAT TATCGCCGAA ACCAATGCGC ATGTGCAAGT TGAGCGGCTC
CCCGTGATCG AAGGCAATGC ATTGCAGCTG GGTCAGCTTT TCAGGAACCT GCTGGCAAAT
GCATTGAAAT TCCGTCGGCC CGGGCACGCG CCGGTGGTGC TCGTCACTTA CGACCAGGTA
CCCCGAACGC TGCTTCCCGC CGCCGCGAAC CCGGTCCGCA AATCGGAGGT CTATCACCTG
ATCCAGGTGC AGGACAATGG GATAGGGTTT GACGAACAAT ATCTGGACCG CATATTTCAG
GTGTTCCAGC GGCTTCACGG GCGGAGCGAA TATGAAGGGA CAGGCATCGG ATTGGCGATT
TGCGAAAAGG TGGTGACGCA TCATGGCGGC GCGCTCACGG CAAGCAGTCA ACTCGGGCAC
GGAGCCACGT TCAAGATTTT TTTACCAATG TAG
 
Protein sequence
MSGIVPAKES GLDSNDKLQL QSMVESAPFP IGVYVGREMR IALVNQSIID VWGKGPEVVG 
KTYAEVLPEL AGTGIYEQIQ KVYTTGEPHH ANNQRVDLVV DGILQEFYFK YSFTPLFDAQ
GEVYGVMNTA ADVTDLVLAR QQLELAQTSL KGAIDLAQLG TWELDLTTRA VSYSENIQSW
FGFAKERIAI DDVYDPMHPE DRDPVEAAIN RAIAPGSSGI FDAEYRLVHP DTRSERVVHA
RGIVVSNAEG KPYKLLGTAQ DVTAERHRQQ DLERLVQERT TELEALNEEL AAQNEEYMVV
NEELEEANRL LLRSNENLEQ FAYAAGHDLQ EPLRKIRQFS ALLTSHIPGA AGNDARYIER
INAAAGRMST LINDLLEFSN ITTGQARIEP VELNAVIDTI LLDLDLIIAE TNAHVQVERL
PVIEGNALQL GQLFRNLLAN ALKFRRPGHA PVVLVTYDQV PRTLLPAAAN PVRKSEVYHL
IQVQDNGIGF DEQYLDRIFQ VFQRLHGRSE YEGTGIGLAI CEKVVTHHGG ALTASSQLGH
GATFKIFLPM