| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1729 |
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| Symbol | |
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| ID | 8225300 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 2111260 |
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| End bp | 2113818 |
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| Gene Length | 2559 bp |
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| Protein Length | 852 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644929583 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_003086135 |
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| Protein GI | 255035514 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.411333 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCATTCA CCGCTGCGAG CGCGCATTCG CAAAGCAGCG TTCTCCAAAA ACGCATTACG
GTGCAGCAGG CCGACATCGC GCTCGGCGAC GCGCTTTTGC TCCTGGGCGA CAAAGCGGGA
TGCACATTTT CATACAGCAG CAGCCTAATC GACCCGCAGC GGAAAGTGCA GCTGCAATAC
GATAACGTTC CGCTCGGCCG GATCCTCGAA GACCTGCTCG GCGAGGTGGC AAAGGGCGCC
CGCGTGCAGG ATAATGGAAG CGGTGTGCCG CAGGTAGCGA TCCGGCCCGT GCGGCGTACG
GGCGCTATCA AAGGGGAGAT CCGCACGTCC GACGGCAAGC CTGCCGGGTT TGTGAATGTG
AGCATCAAAG GCCTGGGCAA GGGCACCGTG GCCGACGAAA ATGGCTCGTT TACGATCCGC
AATGTGCCCG ACGGCGCGCA AACGGTGGTC GTCCGGCTGA TCGGCTATGA GGCCGTGGAG
CAGGCTTGCA CGGTGGAGCC CGGAATGGTG TCGGAGCTGC CGGTGATCCA CATCCAGGAA
AGTTCGAGCA CACTTCAGGA AGTGATCGTG CAGGGCAATG TGAATGCATT TGCCAACAAG
GAAACCGACT ATGCGGCCCG GATGCCGCTC AAAAACCTCG AAAACGCGCA GGTTTATAAT
GTTATTTCAA AAGAATTTCT GAACCAGCAG CTCGTGGTCG ACTACAAGGA TGCGCTCAAA
ACCGCTCCGG GCGTGGTGCC GTTCATCAGC GCAGCGGGAA CCAACCTGGC CTACATCCGC
GGCTTTCCCG TGCAGGCGTC GGTGCGGAAC GGCCTCGCCA CGCAAACGTG GACGCTCGTG
GACCCGGGCA ACATCGAACG CATTGAAATC CTGAAAGGTC CGTCGGGGAC GCTGTTCGGG
GCTAACAATG TGTCGTTCGG GGCGGTGGTG AACCGGGTGA CCAAGAAACC GATGGAAACC
TTCCGCGGCG AGCTGTCGTA TTCGCTCGGA AGCTGGAACC TGAGCCGCCT GCTGGTGGAC
ATCAATGCGC CGGTGAATGC CGACAAAACT GCGCTTTTCC GGGTAAATGC CGCCCTTCAC
GAAGAGAAAA CCTTCCAGAA TTTCGGCGGG AACAAAAGCT ACATTGTCGC GCCGAGTTTT
TCCTATAAAG TGAATGACAG GCTTTCGTTT CTCTTCGAGA CGGAGTTTTT TAAAGGACAA
ATGATCCAGC AGCCCTATAA TGTGCTCACC ACGGACGTTA CCTTCCGTAA TCTCAATGCA
TTAAAACCAT TTTACAAAAA CTCTTTCGCC GGCTCCGACC TGGAAGGCAC CAAAATTTCC
AACAACTTTT ACGCAGTTTC CAACTACCGC ATTTCGGACC GCTGGACGTC CCAAACCGGC
CTGGCTTACA GTTTCAACCG CGAAGCAGAC CAGTTCCAGC TCACGGCCAA CTGGCTGAAC
GACACCACCG TTGCACGGAC TTTCTGGAAA AACCTCCGCC GGGATTTTTC AACGCTCAAC
CTGCAACAGA ATTTCAATGG TGAATACTAT ACCGGCAACA TGCGCCACCG GATCGTGCTG
GGCATTAACC TCATCCGCAA CACCGACGAC CGCTTCGTGG TGGAAGACCC GCGGTACGAT
ACGCTGAACC CCGCGCGGCC ATTCAAGCCG TTTTTCAGGG ATAAGGCCGA TGCCATCGTG
GCCCGCTCGA CCATCCAGAA CTCCCATCTC GACTGGATGA CGTACAGTGC CTATTTTTCC
AATGTATCCA ACATTACCGA CCGCTTGCTG CTCATGCTCA GCCTGCGATT CGACCGCTAC
GACAAAAACA ACAGCACCCG AAACGGGACC GTGTCCGTGG ACGCCTACCA GCAGAACGCG
CTTTCGCCGA AGCTGGGATT GATTTACCAG GTCGTGAAGG ACCAGGTATC GCTTTTCGCG
AATTATATGA ATGGTTTCAA CAACGTGGGC CCGGTGACGC AGCCGAACGG CGAAGTCCTC
GAACTGAAAC CGCAGCGCGC CAACCAATGG GAAGGCGGGG TGAAGATGGA GACGTTCAAT
AAGAAACTCA GCGCGACCGT CAGCATTTAC GACATCCGCG TGAGCAACTC TACGCGTACC
AACGAGCAGC AATTTACCGT GCAGGACGGC ACGCAGCGCA GCCGTGGTAC CGATTTGGAA
ATCATCGCAA ACCCACTCAA AGGACTCAAC ATTCAGGCGG GTTATTCATA CAACAAAAAC
ACCTACCTGA AAGCCGATGA ATCCATGGAA GGCAAATGGG TAACCGGCTC GCCGAAGAAC
ATTTTCACCG CATGGCTCAC CTACAAGCAC ACCGGCCGGG TGCTGAACAA TGTGGGCGTC
GGTTTCGGCG GAAATTATGT GGATGATGTG TTTTACGATG CGGCGAACCT TTTTGTGGTG
CCGGCCTACA CCCTGCTCAA CGGTACGGTC TACTATGAGA AAGCGAAATG GCGCATCGGC
CTCAAGGTGA ACAACATCAC CAATACGGAG TACTTCAATG CATGGAGCTA CCCACAGCCG
ACGAGACAGC TCATCGGTAA CCTGACTTTC AAATTCTGA
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| Protein sequence | MAFTAASAHS QSSVLQKRIT VQQADIALGD ALLLLGDKAG CTFSYSSSLI DPQRKVQLQY
DNVPLGRILE DLLGEVAKGA RVQDNGSGVP QVAIRPVRRT GAIKGEIRTS DGKPAGFVNV
SIKGLGKGTV ADENGSFTIR NVPDGAQTVV VRLIGYEAVE QACTVEPGMV SELPVIHIQE
SSSTLQEVIV QGNVNAFANK ETDYAARMPL KNLENAQVYN VISKEFLNQQ LVVDYKDALK
TAPGVVPFIS AAGTNLAYIR GFPVQASVRN GLATQTWTLV DPGNIERIEI LKGPSGTLFG
ANNVSFGAVV NRVTKKPMET FRGELSYSLG SWNLSRLLVD INAPVNADKT ALFRVNAALH
EEKTFQNFGG NKSYIVAPSF SYKVNDRLSF LFETEFFKGQ MIQQPYNVLT TDVTFRNLNA
LKPFYKNSFA GSDLEGTKIS NNFYAVSNYR ISDRWTSQTG LAYSFNREAD QFQLTANWLN
DTTVARTFWK NLRRDFSTLN LQQNFNGEYY TGNMRHRIVL GINLIRNTDD RFVVEDPRYD
TLNPARPFKP FFRDKADAIV ARSTIQNSHL DWMTYSAYFS NVSNITDRLL LMLSLRFDRY
DKNNSTRNGT VSVDAYQQNA LSPKLGLIYQ VVKDQVSLFA NYMNGFNNVG PVTQPNGEVL
ELKPQRANQW EGGVKMETFN KKLSATVSIY DIRVSNSTRT NEQQFTVQDG TQRSRGTDLE
IIANPLKGLN IQAGYSYNKN TYLKADESME GKWVTGSPKN IFTAWLTYKH TGRVLNNVGV
GFGGNYVDDV FYDAANLFVV PAYTLLNGTV YYEKAKWRIG LKVNNITNTE YFNAWSYPQP
TRQLIGNLTF KF
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