| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1724 |
|---|
| Symbol | |
|---|
| ID | 8225295 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 2102953 |
|---|
| End bp | 2104428 |
|---|
| Gene Length | 1476 bp |
|---|
| Protein Length | 491 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644929578 |
|---|
| Product | RagB/SusD domain protein |
|---|
| Protein accession | YP_003086130 |
|---|
| Protein GI | 255035509 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.120109 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCTCAA AAAATATCAA AATAGCTGTC GCCCTGGTGA TCCTCGCGTT TTCGGGAACC
TCCTGCGAAG ATTTTCTCGA ATCAAAACCC ATTTCACAGA TTGGTGAAAC GGACTTTTTC
AAAACGGAAT CCGATTTCCG CCAAGCAGTT GCCGGTGCCT ACAATGCCCT TGGCCAGGTG
TATTCGGGCA ATGGATATTA TTCGCTGCTG GTCGACCTGC GTTCCGACAA CACCACCGAA
CTCGGCCCGG GCGGGGGCGG TAACGATGCC AAAAGGAATA TCGACGAATT CCGCGAAACC
ACTGACAATG AGCACCTCAC GGCATTCTGG CAGACGAGCT ACATTCTCAT CGCGCGGACA
AACAGCATTC TGGCCCGCAT TGATGCCTCG CCTGTATCGG ACAACCTGAA AAAGCAGTTT
ACCGGCGAAG CCAGTGCTCT CAGGGCGCTC GCCTATTTCA ACCTGGTGCG GCTTTGGGGC
GGTGTGCCGC TGGTGACCGA GCCCGTTACC GACATCGACG CCAGCTACAA GGTGGGCCGC
GCCTCTGTGC AGGAAGTATA TGCACAAATC GAGGCTGATC TCGTAAAGGC GCAGGGAATG
CTCCCCGCCA CTTACCCAGC CGCTGAAACC GGAAAAATCA CCAAAGGCGC GGCGGAAAGT
CTGCTCGGAC AGGTGTATCT CACCCAGAAA AAATACGCCG AGGCAGTTGC AGAGTTCAAA
AAAGTAGTGA CGGCCGGTAC TTACAGCCTA TTGCCGGTTT ATGCAAATCT TTACAAAGCG
GCCCAGCAGG GAAATGCGGA GGCGGTTTTG CAGGTGCAGT ACCGAACAAT GTCGAATGGC
TTAGGCTCTA ACCTGCCCAA CCACTTCGCT CCCACCGGCT CGCAGGGGAT TCTGATCCCT
ACCGGCGGGG CTTTCGGGTT TAACCAACCG ACGGAAGACA TCGCAGCGGC CTACAAGGAA
GGCGATGTGC GCCGGAACAA CATTGGCGAT GGCTACACGC TCGCTGGCAA CTTTGTAGCC
GCCAAATACG TCCGCGGCTA TGTGGAGCGC GAAACAGGCG GCGGCAATGC CGACTCGGGC
GCCGACTGGT ACGTGATCCG CTACGCCGAT GTACTGCTGA ATTATGCCGA AGCAATCAAC
GAAGCCAACA AAGCGCCCAA TGCGGACGCC TACGCGGCGA TCAACCTCGT GCGGAAACGC
GCCGGGCTCA CTGATCTGTC GGGCTTGACT TATGATACTT TCAAAACGGC GGTTTACGAA
GAAGAACGAC TGGAATCGCC TTTCGAAGGC CACCGCTGGT TTGATCTGCT GCGCACGGGC
CGTGCGATGG AAGTGATGAA TTCGAAACTA TCCGGCCCCG GCAAGCCAAC CGTAGGCGTT
TCCACGCCGA TCAAGCCTTA CCAGCTTCTC TACCCGATCC CGACGCTCGT GGTGACCACC
AGCAGCCCGG CGATCGCGCA GAATGATGGC TATTAA
|
|---|
| Protein sequence | MISKNIKIAV ALVILAFSGT SCEDFLESKP ISQIGETDFF KTESDFRQAV AGAYNALGQV
YSGNGYYSLL VDLRSDNTTE LGPGGGGNDA KRNIDEFRET TDNEHLTAFW QTSYILIART
NSILARIDAS PVSDNLKKQF TGEASALRAL AYFNLVRLWG GVPLVTEPVT DIDASYKVGR
ASVQEVYAQI EADLVKAQGM LPATYPAAET GKITKGAAES LLGQVYLTQK KYAEAVAEFK
KVVTAGTYSL LPVYANLYKA AQQGNAEAVL QVQYRTMSNG LGSNLPNHFA PTGSQGILIP
TGGAFGFNQP TEDIAAAYKE GDVRRNNIGD GYTLAGNFVA AKYVRGYVER ETGGGNADSG
ADWYVIRYAD VLLNYAEAIN EANKAPNADA YAAINLVRKR AGLTDLSGLT YDTFKTAVYE
EERLESPFEG HRWFDLLRTG RAMEVMNSKL SGPGKPTVGV STPIKPYQLL YPIPTLVVTT
SSPAIAQNDG Y
|
|---|
| |