Gene Dfer_1659 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_1659 
Symbol 
ID8225230 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp2018045 
End bp2018656 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content48% 
IMG OID644929514 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003086066 
Protein GI255035445 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 


Plasmid Coverage information

Num covering plasmid clones38 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.245812 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACCCGG CTTTTGCGAG GGTTAATCCA CTAATTCGTT ACCAGCAATT GGATTCCGAG 
TCCCTGCATA GCGCCGATCC TTTTTCGGAA CCGAAAGTCC TTCAAAAGAA AGATTTTGAG
GCACTTTACA GGTTGTATTG GCAGCGCTTG TACAATTTTG CCCTTTCCAA AACGCACGAC
AGGGACGTTG CGGAGGAAAT CGTACAGGAC TTGTTTGTAA CCATTTGGGA AAAACGCCGG
GAATTGCGGG TGACAAACTA CCAGAGCTAC CTCTTCGTGT CGGTGCGCAA CAAGGTCATC
AACCACTACA AGCAGGCAAT CTTTGCAGAT CTGGACAGTG CTTCTGATTC CGTAGCTCCC
GATTATCCGC TGTTTCTGGA AGAGCTCGAC GCTGCATTGA GAAACGCCCT GGGCCAGCTT
CCCCAAAAAA CGCACGACAT CTTCTTTCTC AGCCGGTTCG AGGGAAAATC GGTGAGCGAA
ATTTCCTCTC AGCTCGCAAT CCCCGAACGT ACCATCGAAT ACCACATCAC CCAGGCGCTT
CGCCAGCTGA AAGTACTGCT CCGCAACAGT ACATCCATTA TCATTGCAGT TATTATAAAT
ATTAAATTTT AA
 
Protein sequence
MHPAFARVNP LIRYQQLDSE SLHSADPFSE PKVLQKKDFE ALYRLYWQRL YNFALSKTHD 
RDVAEEIVQD LFVTIWEKRR ELRVTNYQSY LFVSVRNKVI NHYKQAIFAD LDSASDSVAP
DYPLFLEELD AALRNALGQL PQKTHDIFFL SRFEGKSVSE ISSQLAIPER TIEYHITQAL
RQLKVLLRNS TSIIIAVIIN IKF