| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1623 |
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| Symbol | |
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| ID | 8225194 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 1965815 |
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| End bp | 1969177 |
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| Gene Length | 3363 bp |
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| Protein Length | 1120 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644929478 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003086030 |
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| Protein GI | 255035409 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.21051 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGTAT TTATCCGACA AAACAATGGC ATTGGCCAGC ATTACCTAAG CAGGCTCTGG
GTGATTCTCG TCCTCGCGGC TTCCCTTTTC CACCCGCTCC ACGCGGAAAG AGAGAAGACG
ATCCGGGATG TGAAAATTTC GATCAGGGCT GAGAAACAGT CTTTAAAGGC TATTTTAACA
CAAATCGAAA CAAAAAGCGG GTTCGTTTTT ATTTACCAGG ATAGACTAGT AAATCCATAT
ACTAACCTCG CTTTTGAGGC CCGCAATGAA TCGCTTGAAC AGGTGCTGAA CAGCCTGTTG
CGCCAGCGCG GCCTCGACTA CGAACAGCAG AAAGAAAAAG TGATCATCCG CAAAGCGCCT
GCGCAGACCG GTGAAGCCGC CGATTCGGAC GAGGCGTCCG ACCAGGCGAT CAACGGCGTG
GTGAAAGACG AGAAGGGCGA CGGTCTCCCG GGCGTGACCA TCCGCGTGAA AGGAACGAAT
AAGGGCACGC TCACCGACGC CAATGGCGCA TTCACGATTT CGGCGGGCGG CAGCGACGTG
CTCATCTTCT CCTACATTGG CTATGTCACT GCCGAACAAG CCATTAGCAG CGCTACCAGC
ATCGATATTT CCCTCAAACC CGACGAAAGC CAGCTCAGCG AGGTGATCGT GACGGGTTAC
ACCCAAACCA AACGCAGCGC CCAAACCGGC GCCGTCACAA CCGTCGATTC CAAGGACTTT
TCGCAGGTTT CCTACAACAG CGTGATCGAG AAATTGCAGG GTACGGTGCC CGGTTTGCAG
ATTTCGAGCA ATTCGGGCGT GCCGGGCACA TCGGTGCTCG TGCGGCTGCG CGGCGCCACG
TCTATTAAGG CAGGGAATGA TCCATTGTAT GTGGTGGATG GCGTTTTTAT CAACAATGAA
AACTTACAAG GCCTTTCGCG CGGCATGGGC GGGCAGACGC CCAACCCGCT TTCCGACCTG
AACCCGGACG ATATCGAATC GGTATCGGTG CTGAAAGATG CCAATGCGAC GGCGCTCTAC
GGGGCACGCG GTGCCAATGG CGTGATCCTG ATCACGACCA AGCGCGGCGC GCGCAACTCG
CGTACGAAGG TGAGTATCAA TGTGGAACAG GGTTTTGCAA AAGCCACCAA CCTGTGGCAG
CTGGTAACCG GTCCCGAGCA TGCCCAGCTG GTGAACCTGG TGCATGTAAA CGATGGGAAG
TCGTTTGCTA CCCGCCCGTT CCGGCCCGTA TCGGAGGCCG TAGCAGGTTT TCCGGCATTC
GGCAGTCCCG AAGAGCAGGG CACCTACGAC CGGGTGAGCG ACATTTTCCG CACGGCAGCA
TTGAGCAAAT ACACCTTATC CGTGTCCGGC GGCGACTCGC GCACCAACTT CTACCTCGGC
GGCGAGTTCC AAAACCAGCA ATCGACGCTC AAAACGCAGG ACTTCAAGCG GTATTCCTTC
CGTTTCAATA TCGACCATTC GATTTTGCCC AACCTTAAAA TCGGGACGAG CAACACCCTT
TCCAGCGTGC CGCGCCGGCT CGTGCGGGTA GGGGACGGCC CGGCGGGACT GTTCCAGGCG
GCATTGCACA CGCCTACTTT TTACCCATTC TACAATGAAG ACGGCAGCTA TGCCAAACCG
ACGGTCTTCG ACAGCCACCT CGCCATTCTA GAAAACTCGG ACACGCATTC GGTGAGCCTG
CGGAGCATCA ACAATGTGTA CGCGCTCTGG AATATCCTGC CGAACTTGTC CTTCAAATCC
TCGTGGAGCA ATGATTACAA CAACTATCAC GAGAAGGCCT ACTACAACAC CAACCTCGTG
TACGGCCAGC CCGCGGGCGA GGCAAACGAC GTCACGACGA TCAAGCAATC GCTCATTGCC
GAGCAGCTTT TGAATTACAA TTTGTCCTCT GCCAAAAGCG AATTCTCAGT TTTCGTAGGT
AACACCATTC AAAAAACCAC TACCGAACGC GCCACACTGA CCGGCACCGG CTTCCCAAGC
AACCAGTTCA AGCGCATTGC GTCGGCCGCC GTGCAAACAG CCTCATCCAC AGGCTCGTCG
TACGGATTGC TCTCGTTTTT TACAGGTTTT AATTATAGTT ATGACAACCG GTACAGCATT
GACGGCAACA TCCGCGCTGA TGCTTCTTCG CGCTTCGGGG CCGATCACCG CTGGGGCTAT
TTTCCATCGG TGGGCTTGGG CTGGAACATT TCCAAAGAGG CATTTTTTTC TGAAAATAAC
ACCCTCACCG ACCTGCGCTT CAAGGCCAGT TTAGGATTAA CGGGTAACCA GGATATAGAC
GATTTCGCTT CCCGCGGCCT GTGGGCGGGC GGTACCAACT ACGGCGACCA GCCCGGCATC
GCGCCCAGCC AGCTCGCCAA TCCTGATCTG AAATGGGAAA CCACGCGCCA GTACAACTTC
GGGCTGTCGG GGGCATTGCT GAAACAGCGG CTCAATTTTG AATTCAATTA TTACGATAAA
TTCACCTACG ACCTGCTCCT CGACCAGCCC GTGGCGCCGA ATACCGGATT TTCGTCGGTG
GTGCGCAATG TGGGCGAGAT CAGCAACCGG GGCGTGGAGC TGTTGCTAAG CTCGGTGAAT
GTGCGGAACC AGGACCTGGA ATGGAAAACG ACGCTCACCG TATCGCGCAA CGTGAACCGC
GTGCAGAAGC TGCTGACGCC CATTACGGCC GGCTACGACA TGTTCCGCGT GGTGGAAGGC
CAGCCGTTGT ACTCGGTGTA CGCTTATAAA GAGCTCGGGC TGAATGCCGA GAATGGCAAT
GCGATTTACG AGGATATTAA CAGGGACGGC AGGATCACCG TGGACGACCA GCACATCGTC
GGCAATATCT GGCCCAAGTT CGAGGGGGCA TTTCGTAACA CATTGTCGTT CAAAGGCCTC
GATCTGAACC TGAATTTTTA TTACAAATAC GGCAACTCGG CCTACAACTA CACGGCTTAT
TTTCTGGAAA CCGCCGGTAC CCGCGGCGTG ACGCGCTCCA TCCAGAAAAG CTCGCTCAAC
TACTGGCAGA AACCCGGCGA CACCGGCGTG CTGCCCCGCC CGACCAACCT CACCAACCCC
GACGGCAGCC TCAACTACTT CCGCACGGGC AACAGCCGCT ACCTAGAAGA CGCTTCCTAC
CTGCGCCTGC GCGACATTAC AATCAGCTAT AACCTGCCCA AAAGCATCAC GTCGGCCATT
CGTACCTCGG GCGTGCGGCT GTACCTGACG GCCACCAACC TGTGGACGCT GACCAACTAT
TCGGGTCCCG ACCCCGAGGT GAACGTGGCG GCCGACAGCC GCAACGGGCT CGTGCAAGGG
CTGGATTTCG GCACGCCGCC GCAGCCGAAA TCGGTGGTAC TGGGTGTGAA TCTGAGTTTT
TAA
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| Protein sequence | MTVFIRQNNG IGQHYLSRLW VILVLAASLF HPLHAEREKT IRDVKISIRA EKQSLKAILT
QIETKSGFVF IYQDRLVNPY TNLAFEARNE SLEQVLNSLL RQRGLDYEQQ KEKVIIRKAP
AQTGEAADSD EASDQAINGV VKDEKGDGLP GVTIRVKGTN KGTLTDANGA FTISAGGSDV
LIFSYIGYVT AEQAISSATS IDISLKPDES QLSEVIVTGY TQTKRSAQTG AVTTVDSKDF
SQVSYNSVIE KLQGTVPGLQ ISSNSGVPGT SVLVRLRGAT SIKAGNDPLY VVDGVFINNE
NLQGLSRGMG GQTPNPLSDL NPDDIESVSV LKDANATALY GARGANGVIL ITTKRGARNS
RTKVSINVEQ GFAKATNLWQ LVTGPEHAQL VNLVHVNDGK SFATRPFRPV SEAVAGFPAF
GSPEEQGTYD RVSDIFRTAA LSKYTLSVSG GDSRTNFYLG GEFQNQQSTL KTQDFKRYSF
RFNIDHSILP NLKIGTSNTL SSVPRRLVRV GDGPAGLFQA ALHTPTFYPF YNEDGSYAKP
TVFDSHLAIL ENSDTHSVSL RSINNVYALW NILPNLSFKS SWSNDYNNYH EKAYYNTNLV
YGQPAGEAND VTTIKQSLIA EQLLNYNLSS AKSEFSVFVG NTIQKTTTER ATLTGTGFPS
NQFKRIASAA VQTASSTGSS YGLLSFFTGF NYSYDNRYSI DGNIRADASS RFGADHRWGY
FPSVGLGWNI SKEAFFSENN TLTDLRFKAS LGLTGNQDID DFASRGLWAG GTNYGDQPGI
APSQLANPDL KWETTRQYNF GLSGALLKQR LNFEFNYYDK FTYDLLLDQP VAPNTGFSSV
VRNVGEISNR GVELLLSSVN VRNQDLEWKT TLTVSRNVNR VQKLLTPITA GYDMFRVVEG
QPLYSVYAYK ELGLNAENGN AIYEDINRDG RITVDDQHIV GNIWPKFEGA FRNTLSFKGL
DLNLNFYYKY GNSAYNYTAY FLETAGTRGV TRSIQKSSLN YWQKPGDTGV LPRPTNLTNP
DGSLNYFRTG NSRYLEDASY LRLRDITISY NLPKSITSAI RTSGVRLYLT ATNLWTLTNY
SGPDPEVNVA ADSRNGLVQG LDFGTPPQPK SVVLGVNLSF
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