Gene Dfer_1611 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_1611 
Symbol 
ID8225182 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp1949793 
End bp1951961 
Gene Length2169 bp 
Protein Length722 aa 
Translation table11 
GC content58% 
IMG OID644929467 
ProductGlycerol dehydrogenase (acceptor) 
Protein accessionYP_003086019 
Protein GI255035398 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG4993] Glucose dehydrogenase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.670617 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTGGAA TATCCCGATT CAGAAAACAT TTTTCCAACA ATAACCTCCT CCTCATTCCC 
GCAATCGCCG CATTTGCCGG CCTGGTAGCT TACCAAACCC GCCAGTCCGA CGACCGCTCC
TGGGGCGTGT ACAAGGCCGA TGCCGAAAGT ACCAGCTATT CGCCCCTCGA CCAGATCAAC
ACATCGAATG TAAGCCAGCT TAAACCGGCC TGGACGCATT CCTACCACGA TATGAAGGAT
GGAAGCAGGC CCGGAAACAG CGAATGCAAC CCCATCGTGG TGGACGGCGT GATGTACACC
ACCTCTGCCC GGCATTGGGC CTATGCGATC AACGCGCGCA CCGGGGAGCA GCTCTGGGCG
TTCGACCCGT TTGACGGGGC CGAAGGCGGC GGGGTAAGCC GCGGCGTTAC CTACTGGGAG
GATGGCCAGG ACAAACGTAT CCTCTTCACC GGTGGAGATA ACCTCTTCGC GCTCGACGCC
CGCACGGGCA AGCCCATCCC AGGTTTCGGC CAAAACGGCC GGGTGAGCAT GAATGTGGGC
TTGCGCGACC ACCCGGCGAC CATTTCGGTG ATTCCTACTT CGCCCGGCAT TGTGTACAAA
GACCTGCTCA TTATGGGCGC CGAGGTTTCG GAATTATACG GCGCACAGCC CGGCTATATC
CGGGCCTACA ACTGCAAAAC CGGCAAATTG GAATGGACAT TCCACACCAT TCCCCTTCCC
GGAGAGCCGG GCTACGAAAC CTGGCCCAAA GATGCTTATA AATATGCAGG TGGCGTGAAC
GACTGGGCCG GCATGAGTGT AGACGCCCGC CGCGGCATCG TGTTCCTCGC TTTGGGCTCG
CCTTCCTACG ACTTCTACGG CGCAGACCGC CATGGCGACA ACCTGTACGG CAATAGCGTT
GTGGCCCTGG ATGCGGCTAC GGGCAGGTAT ATCTGGCATT ACCAGCTAGT CCATCACGAT
TTGTGGGACT ACGACCTTCC CGCTCCTCCC AACCTGGTGA CCGTCAACCG CGACGGCCAA
AAGATCGACG CTGTGGCGCA GGTGACCAAG CATGGGTTTG TATTTGTATT TAACCGCGAA
AACGGGGAAC CGCTGTTTCC GATCGAGGAA AGAAAAGTGC CGGCGTCCAA CATTCCGGGC
GAGCGGGCCT CTCCTACCCA GCCATTCCCG CTGAAACCCA AGCCTTTTGC ACGACAATGG
ATGACGGAAT CCGATTTGAC GCATTATACC GATGCCGGCC ATGATTCGCT CGTGAAGAAA
TTCCGCTCCA TGCGCTATGA AGGCCTTTTT ACACCGCCCG ACCTGAAAGG CACGCTTATG
CTGCCGGGCA CACGCGGCGG TGCCGAATGG GGCGGCGCTG CCTACGAGCC GGCCTCGACG
GTGCTTTTTG TAAAGTCCAA CGATTCGCCC GAAATACAAT CAATGAAGAA GGTAGACCCT
GAGCAGGAGG CCAAAGACCA GACGGTTTTC GACCAGGGCA AAACATTGTA CATGACCTAT
TGCATGGCCT GCCATGGCAA GGACAAGAAC GGCGATGAGC CCAACTACCC GTCGCTGATC
GGCCTCCGCA GCCGCATGAC CCGCGAGGCG GCGCTCGACA AGATCAAAAA AGGCGGCGGC
AAGATGCCTG CATTTGCCTC GGCGATCAAG GGGAAGGAAA AGGGCATCAT CGCATTCCTG
TTCGACCGCC CGCAAAATTC CGCCAAAGTG ACGAAGCAGG AAACCGGACA AACACAAAAA
GGCGCCGACA AATACCTGAA CCTAACCGCC TACGGCCATT TCAGAGATCC GCAAGGCAAC
CCGGCGCTGC GTCCGCCGTG GGGAACACTC AATGCAATCA ACCTCAGCAC GGGCGACTAC
GAATGGCAGA TACCACTCGG CAACGACGAG AAACGGCAGG AAAACGGCGG CCCCGAAACC
GGCCAGGAAG GCTCGGCGGG CCCTATCGTC ACCGCCGGCG GACTGATATT CATCAGCGGA
ACGCTGGACC GCAAGCTTCG GGCATTCGAT AAAAAGAACG GCAGACTCGT TTGGCAAACT
ACGCTCCCGG GCGTGGCCAA TGCTACTGCC TGCACGTACA TGAGCGGCGG GAAGCAGTAT
GTGGCGCTGT CGGTGGGTGG CACGAAGGAG AATCCGTCGG GTTTTGTGAT GGCGTTTGCG
GTGCCGTAA
 
Protein sequence
MIGISRFRKH FSNNNLLLIP AIAAFAGLVA YQTRQSDDRS WGVYKADAES TSYSPLDQIN 
TSNVSQLKPA WTHSYHDMKD GSRPGNSECN PIVVDGVMYT TSARHWAYAI NARTGEQLWA
FDPFDGAEGG GVSRGVTYWE DGQDKRILFT GGDNLFALDA RTGKPIPGFG QNGRVSMNVG
LRDHPATISV IPTSPGIVYK DLLIMGAEVS ELYGAQPGYI RAYNCKTGKL EWTFHTIPLP
GEPGYETWPK DAYKYAGGVN DWAGMSVDAR RGIVFLALGS PSYDFYGADR HGDNLYGNSV
VALDAATGRY IWHYQLVHHD LWDYDLPAPP NLVTVNRDGQ KIDAVAQVTK HGFVFVFNRE
NGEPLFPIEE RKVPASNIPG ERASPTQPFP LKPKPFARQW MTESDLTHYT DAGHDSLVKK
FRSMRYEGLF TPPDLKGTLM LPGTRGGAEW GGAAYEPAST VLFVKSNDSP EIQSMKKVDP
EQEAKDQTVF DQGKTLYMTY CMACHGKDKN GDEPNYPSLI GLRSRMTREA ALDKIKKGGG
KMPAFASAIK GKEKGIIAFL FDRPQNSAKV TKQETGQTQK GADKYLNLTA YGHFRDPQGN
PALRPPWGTL NAINLSTGDY EWQIPLGNDE KRQENGGPET GQEGSAGPIV TAGGLIFISG
TLDRKLRAFD KKNGRLVWQT TLPGVANATA CTYMSGGKQY VALSVGGTKE NPSGFVMAFA
VP