| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1581 |
|---|
| Symbol | |
|---|
| ID | 8225152 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 1897837 |
|---|
| End bp | 1899573 |
|---|
| Gene Length | 1737 bp |
|---|
| Protein Length | 578 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644929437 |
|---|
| Product | Tetratricopeptide domain protein |
|---|
| Protein accession | YP_003085989 |
|---|
| Protein GI | 255035368 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.00337533 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.487012 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCCCG GCCAATGTTA CCTTGCACTC ATTTTGTTCA TTAGTTTTTC CTGCGGTAAA
AAACAGGAAG AGCAGGAAAA GCAATCGGCC GGCAATGCCG CGCCGATTAC CGTTTGCTAC
AATCCCAAAA CCACCGACGC CGAATGGTAC AAATCATCCA AAAAAGCGCC GCTGCTGAAT
GGGCTGAAAG GCATCGATTT CAAAATCACC ACCGCTAATC CGGAAGCGCA GGCCTATTTC
AACCAGGGAT TGATGCTGGC CTACGGGTTT AACCATGCGG AGGCGGCCCG GTCGTTTTAT
GAAGCAATCC GACTGGATTC TGCCTGTGCC ATGGCGCATT GGGGCTTCGC TTATGTGCTC
GGCCCGAACT ACAATGCCGG CATGGAGGAA GACAACTTCC AGCGCGCCTG GGAAGCGGGC
CAAAAGGCCC GGCAGTTCGC TGTCAACACC AGTCCGAAAG AGCAGGCACT CATCGCCGCG
CTGGCCGTAC GGTATGCCGA AAAACCACCT GCCGACAGGC GTCCCCTGGA CATTGCCTAT
GCCGCAGCGA TGAAGAAAGT GTACACGCAG CATCCCTCCG ACCCGGACAT TGGGGCTCTG
TATGCCGAAG CCGTGATGAA CCTGCACCCA TGGGACCTTT ATGAGAAACA GACCAAAGCA
CCCAAGGCGT GGACACCGGA GATCATGGCC GTTTTGGAAA GCCTGCTGCG CAAAAACCCG
AAACACCCCG GCGCGCACCA CCTGTATATC CATGCCCTGG AAGCATCGGG CACACCCGAA
AAAGCCATGA CATCCGCAGC GCTGCTCGAT TCCCTCGTGC CTGGCGCGGG GCATCTTTTG
CATATGCCTT CACACATTTA CATCAACACC GGCGACTACC ACCTCGGCTC TCTGTCCAAC
ATACGCGCAG CGCAGGCCGA CAGCACTTAT GTAACGGCCT GCCACGCCCA GGGTGCCTAT
CCCCTCGCCT ATTTCCCCCA CAATTACCAC TTCCTGGCAG CCACGGCCAC ACTCGAAGGC
AACGCCGCCC TGGCATGGAA TGCGGCGCGG GAGGTGCAGC AGCACACCGC CAAAGAGGTA
ATGCGGCTGC CGGGCTGGGG TACATTACAG CATTACTACA CCATTCCCTG CTATGTGGCC
GTGAAGTTCT CGATGTGGGA TGAAATCCTT TCGCAGCCAC GGCCCTCCGA CGATCTCGTG
TACCCGCGCG CGATCTGGCA TTATGCACGG GGAATGGCGT TTCTGGGCAA GCACGACGTG
TCCGGGGCGC AGCAGGAAAT GAGTAAGCTG GGTAAACTGG CTGCCGACAC CAGCTTGCAA
AACCTGACCG TTTGGAATAT TAATACCACC GCCGATCTCG CACAAATCGC CGCGAAAGTG
CTTTCGGCGG GCATTGCAGC GCGACAAAAC CAGCTCGAAA AATCGGCGTC GTTGCTTGGC
GAAGCGGTTG TGATGGAAGA TAAACTGAAC TATAATGAAC CGCCCGACTG GTTTTTCTCC
GTTAGGCACC ACCTCGGTGC TGTTTTGCTA AAAGCCGGTA AACCTGCCGA AGCCGAGGAC
GTGTACCGGA AGGACCTGCT CAATTGGAAG AAAAACGGCT GGGCACTGAT AGGCCTTTAC
CAATCGCTGG AACAGCAGAA AAATGCCGTG GAGGCACGCA CGGTGAAGGC GGCATTCGAT
AAGTCGTGGC AATATGCCGA CACGAAGATC ACCGCGTCAT CCAGCATTGC GGATTAG
|
|---|
| Protein sequence | MKPGQCYLAL ILFISFSCGK KQEEQEKQSA GNAAPITVCY NPKTTDAEWY KSSKKAPLLN
GLKGIDFKIT TANPEAQAYF NQGLMLAYGF NHAEAARSFY EAIRLDSACA MAHWGFAYVL
GPNYNAGMEE DNFQRAWEAG QKARQFAVNT SPKEQALIAA LAVRYAEKPP ADRRPLDIAY
AAAMKKVYTQ HPSDPDIGAL YAEAVMNLHP WDLYEKQTKA PKAWTPEIMA VLESLLRKNP
KHPGAHHLYI HALEASGTPE KAMTSAALLD SLVPGAGHLL HMPSHIYINT GDYHLGSLSN
IRAAQADSTY VTACHAQGAY PLAYFPHNYH FLAATATLEG NAALAWNAAR EVQQHTAKEV
MRLPGWGTLQ HYYTIPCYVA VKFSMWDEIL SQPRPSDDLV YPRAIWHYAR GMAFLGKHDV
SGAQQEMSKL GKLAADTSLQ NLTVWNINTT ADLAQIAAKV LSAGIAARQN QLEKSASLLG
EAVVMEDKLN YNEPPDWFFS VRHHLGAVLL KAGKPAEAED VYRKDLLNWK KNGWALIGLY
QSLEQQKNAV EARTVKAAFD KSWQYADTKI TASSSIAD
|
|---|
| |