Gene Dfer_1566 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_1566 
Symbol 
ID8225137 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp1874473 
End bp1875537 
Gene Length1065 bp 
Protein Length354 aa 
Translation table11 
GC content59% 
IMG OID644929423 
Productanti-FecI sigma factor, FecR 
Protein accessionYP_003085975 
Protein GI255035354 
COG category[P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG3712] Fe2+-dicitrate sensor, membrane component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGCGAG AAAGCTATTC TACCGTCACA CAGTTTTGCG ACGATACTTC ATTCCGGAAC 
TGGGCCAGCA CCGGCCGGGA CGAGGCCGGC TGGGCAACAT GGCTCGACGC AAATCCCGAC
AAGGCGCAGC TTGCCCGGCA GGCGCGTATG CTCATTCTGG CCATCGGCAG GGAGTCGCCC
GATATGCAGG CCGGTGAAGC CGACGAGGCC CTGGCCCAAA CCTGGTCGCG GATCAGGCAG
CAGGAAGGCG GCCGGGTGGT GCGGTTTGCG GTGTGGTGGC GGGCCGCTGC GGCGGTGCTC
ATCCTCGGCG TAGGCCTCGT GTGGTATTTT TCACATAAAT ATCCGGGGCG GCAGCGCGCG
GCGGGGTTGC CCGGGCCCGC AGTGTCCGGA GCGAACGGCG TGATGGCGCT GCATAATGCA
TCCCGCGTGG CCCGGCTGAT CAACCTTGAA GACGGCAGCA CCATTATCCT GCAACCGGGC
AGCAGGCTGA GCTACCCGGT GAAGTTCGCC GCCGATCGCC GCGAGGTGCA TTTGTCGGGG
GAAGCGTTTT TCGAGATCAG CAAAAACCGC CGCCGGCCGT TCCTGGTGTA CACGCACGAC
ATCGTCACAG AGGTGGTAGG CACCAGTTTC CGCATCAAAG CGCCCGACGA CCAGCCCGAA
GTAGAGGTTT TTGTAAAAAC AGGACAAGTG CATGTCCGGC AGATCAAGGC CGGAAATACC
GCAGACAAGG TCGTGCTGCT GCCCAATCAA TCGGTCAGCT TCCTCAAATC GCAGCACGTA
TTTGAAAAGC CGGAAACGAA GGACATTCCG AAGCGGGCTA TCGAATATCT GAATTTTGAC
TTTACCGACG CGCATGTCGA AACCATTTTC GCGGCGATCG AAAGCGCTTA CGGCGTGACG
ATCGAATACC CGAAGGATGC GTTTCGGGAC TGCTACCTTT CCACTTCACT TGCGGACGAA
CCGCTTCTTT CGAAATTGAA AATCGTATGC GAAAGCATCA GCTCGGGCAC CCAGTTCCGG
ATGGAGGGTG ACCGTGTCAT CATTGAATCT ACCGGATGTA ACTAA
 
Protein sequence
MQRESYSTVT QFCDDTSFRN WASTGRDEAG WATWLDANPD KAQLARQARM LILAIGRESP 
DMQAGEADEA LAQTWSRIRQ QEGGRVVRFA VWWRAAAAVL ILGVGLVWYF SHKYPGRQRA
AGLPGPAVSG ANGVMALHNA SRVARLINLE DGSTIILQPG SRLSYPVKFA ADRREVHLSG
EAFFEISKNR RRPFLVYTHD IVTEVVGTSF RIKAPDDQPE VEVFVKTGQV HVRQIKAGNT
ADKVVLLPNQ SVSFLKSQHV FEKPETKDIP KRAIEYLNFD FTDAHVETIF AAIESAYGVT
IEYPKDAFRD CYLSTSLADE PLLSKLKIVC ESISSGTQFR MEGDRVIIES TGCN