| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1555 |
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| Symbol | |
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| ID | 8225126 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 1854417 |
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| End bp | 1857731 |
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| Gene Length | 3315 bp |
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| Protein Length | 1104 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644929413 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003085965 |
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| Protein GI | 255035344 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.10988 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCGAT GTAAAGAAAG GTGGCCGCTG CGTGCAGGCA CCTTACAAAA ATCGATTGCC
CACGCAGCGC TGATCGCCCT GATCGGCGGC ACGAGCTGGG CATCCCCGGC GATCGAAACC
GGCCTGAAAA CAAGCAGGAC CCACCGGAAC TTCGCTCAGG CCGACCGCCA GATCAAAGGC
CGCGTTACCG ACGGCGATAC GCCCGACGGT ATCCCCGGCG TGAATGTCGT GATCAAAGGC
AGCCAGACAG GCACCGTGAC CGACGCCAGC GGAAATTACA CCCTCGACAT CCCCGATGGC
GGCGCGACAC TCGTGTTTTC CTACGTTGGC TATATCAGCC AGGAAATTCC CTCCGGCACC
CGCAGCACGA TCGACGTGGC ATTGAAGGCC GACACCAAGT CGCTGAACGA AGTGGTGGTG
GTAGGTTACG GCACCCAAAA GAAGGTGAAC CTGACCGGCG CCGTAGACCA GGTGGGCCAG
GAAGTACTGC AAAACCGTCC AATCCCGAAC CTTGCGCAAG GCCTCGTGGG CGTGGTACCC
AACCTGAACA TCCGTATGTT GGACGGAAAG CCGACGCAAT CGCCGTCGTT TAACGTCCGC
GGTACGACGT CCATCGGCCA GAACGGAAGC GCCCTCGTGC TTATCGACGG TGTGGAGGGC
GACCCGCGCA TGCTCAACCC GCAGGACATT GAAAGCATTT CGGTGCTGAA AGACGCCGCT
TCGGCGTCCA TTTACGGTGC ACGCGCGGTT TTCGGCGTGG TGCTCATCAC CACCAAACCG
GCACCGGAAG GCAAAATGCG GATTTCCTAT ACGGCCAACT ACTCGATCAA GTCACCGACC
GAGGTGCCCG ACAATATCGT GGATTCCTAT CCGTGGGCGC AGGGTTTCAG CGACGCATGG
TCGCGCTGGA ACGACAACGG CAGCACGCCG ACGGCGATCA ACAAGACGAT CAGCTTCTCA
CCTGCCTATT TGGCCGAGAT CAAGCGCCGG TATGAAGACC CATCGCTTCC AAAAGTGGAA
GTGAACCCCA CCACGGGCGA GTACCAGTAT TATTACAGCA CGGATTGGTA CAAGGAGCTG
TACAAGAAGA ATTTCAGCGC CCAGGATCAC GCCCTGTCCA TCGCCGGCGG CACCGACAAG
GCTACCTACC TGCTGAGCGG CCGGTTCAAT AACCAGGACG GCTTGTTCCG CTACAATACC
GACAAATACA GCATGTACAA CTTCCGCGGA AAAGGCGGTA TACAGCTGAC ATCGTGGCTG
CGCGTGGATA ACAATACCGA GTTTTCGCAA TTGAAATATC ACCAGCCATT GAACGTGGGA
GAAGGAAGCG GTATTTACCG GAACATCGCC GACGAAGGCC ACCCGTTGGC CCCGCTTCGT
AACCCCGACG GAACGCTCTC ATTCTCGGCA GCCTACACGG TGGGTGACTA TTATTATGGT
AAAAATGCGA TCGACCAGAC GCGCCGCTTC CTGAAAAACC AGACAGCCCT CAAAGCACAG
TTTTTCGAAA AGGCATTGAC CATCCGGGGT AACCTCACGT TCCAGAGCAC CGACCTGGCT
ACCAACCAAA AGCGCGTGCA GGTGCCTTAC AGCCGTACCA AGGGCGTGAT TGGCTACACG
GGAACGAACA CCAACGACCT TGCCGAAGGC CGCAACACGA TTAACTACCT GGCTACCAAC
CTTTATGCCG ACTACGTGAA GTCGTTCAAC AACACGCATA ACTTCACTTT GCTGGGCGGT
TTCAACTACG AGCGCTCGGT CACCGACAGC ATTTACGCGC AGCGCAACGG AATCGTGTAC
AGCGACGCCG ACAACATCAA CCTGGCACTC GGCCAGAGCG TGACCACGGC GGGCCGTTAC
CGCAAATGGG CCATTGCGGG TGGTTTCTTC CGGTTGAACT ACAACTTCCG CGAGCGCTAC
CTGCTCGAAT TGAATGGCCG CTACGACGGT TCGTCGAAAT TCCCGACCGA CCAGCAATGG
GCGTTTTTCC CGTCGGTATC TGCCGGATGG CGCGTGTCCG AGGAGCCATT CTGGAAGGTT
AATCCCAAAG TCATTTCCAA CATCAAGGTC CGCGCTTCTT ACGGTTCGCT GGGTAATGGC
AACATCGATC CTTACTCTTT CTACGAGAAA TTCGGCATTA CGCAATCGGG TCGCGTGATC
AATGGCATTC GTCCGCAAAC GACCAGCATG CCGGGCGTGG TACCAAACGG ACTGACCTGG
GAAACATCCA CTACCGCCAA CTTTGGTCTG GATTTCCATG CGCTGAACAG CCGCCTGCAA
TTCTCTGGGG ACATTTACCA GCGCAAAACG ACGGACATGT TCACCGTAGG CCCGACTGTC
CCCGCAGTTT TTGGAACGAC CGTTCCAAAA GGCAACTATG CCGATTTGAA AACCAATGGC
TGGGAGCTTT CGATCAACTG GGACGACCTG TTCAACGTGG GTTCGAAGCC ATTCCACTAC
AACGTGCGGG TGACTTTGGC GGACTACAAG GCTTACATTA CCAAATACAA CAATCCCGAC
AAAAACCTGA CCGACTACTA CGAAGGCCAG CGCGTGGGTG AAATATGGGG CTACAAAGTG
GCGGGCCTGT TCCGTTCGGA AGCTGAAATC GCGGAATCGC CATCGCAGAG CAACATTCCG
AACACCAACA CCCGCAAAAA CTATCCGGGC GACCTCAAAT TCCAGAACCT GGACGGCGAC
AACGTCATTT TCCAGGGCCT GAACCGCGTG GGCAACTCGG GTGACAAAAC GATCATCGGT
AACTCCGAGC CGCGTTATAC TTACGGTGTA AACCTCAACA GCGACTGGAA CGGGTTCTTC
CTGGGCGCAT TTTTCCAGGG TGTGCTGAAA CAAAACTGGT ACCCATCGGG CGAAGCGCGT
TTCTGGGGAC AATACAACCG GCCTTACAAC GCCTACCCGC GCTGGCACCA GGACAATATG
TTCCGCGAAG AGCTGGGTAA TTTCGATGCT TACCTGCCGC GCCTCGTAGG CTACACGGCA
CAAGGCACCG GACGAGCATT GCAAGTGGCC AACGACCGCT TCATGCAGAA TGTGGGGTAT
ATCCGGTTGC GAAACCTGCA AATCGGCTAC ACGATTCCAG AGCGCATTAC CTCGAAAATC
CACGCCCGCG ACCTGAAGGT GTACCTTTCG GGCGAAAACC TCTGGACGTG GTCGCCATTG
TACAAATGGA CGCGTGACAC CGACGTGACG AGCATTATCG GCTCCGACCG CGACCTCAGC
GGCGGCGCAA GCGGCGATGG TTACAATTAC CCGATGTTGA AATCCGTATC GATCGGATTG
TCACTCAACT TTTAA
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| Protein sequence | MDRCKERWPL RAGTLQKSIA HAALIALIGG TSWASPAIET GLKTSRTHRN FAQADRQIKG
RVTDGDTPDG IPGVNVVIKG SQTGTVTDAS GNYTLDIPDG GATLVFSYVG YISQEIPSGT
RSTIDVALKA DTKSLNEVVV VGYGTQKKVN LTGAVDQVGQ EVLQNRPIPN LAQGLVGVVP
NLNIRMLDGK PTQSPSFNVR GTTSIGQNGS ALVLIDGVEG DPRMLNPQDI ESISVLKDAA
SASIYGARAV FGVVLITTKP APEGKMRISY TANYSIKSPT EVPDNIVDSY PWAQGFSDAW
SRWNDNGSTP TAINKTISFS PAYLAEIKRR YEDPSLPKVE VNPTTGEYQY YYSTDWYKEL
YKKNFSAQDH ALSIAGGTDK ATYLLSGRFN NQDGLFRYNT DKYSMYNFRG KGGIQLTSWL
RVDNNTEFSQ LKYHQPLNVG EGSGIYRNIA DEGHPLAPLR NPDGTLSFSA AYTVGDYYYG
KNAIDQTRRF LKNQTALKAQ FFEKALTIRG NLTFQSTDLA TNQKRVQVPY SRTKGVIGYT
GTNTNDLAEG RNTINYLATN LYADYVKSFN NTHNFTLLGG FNYERSVTDS IYAQRNGIVY
SDADNINLAL GQSVTTAGRY RKWAIAGGFF RLNYNFRERY LLELNGRYDG SSKFPTDQQW
AFFPSVSAGW RVSEEPFWKV NPKVISNIKV RASYGSLGNG NIDPYSFYEK FGITQSGRVI
NGIRPQTTSM PGVVPNGLTW ETSTTANFGL DFHALNSRLQ FSGDIYQRKT TDMFTVGPTV
PAVFGTTVPK GNYADLKTNG WELSINWDDL FNVGSKPFHY NVRVTLADYK AYITKYNNPD
KNLTDYYEGQ RVGEIWGYKV AGLFRSEAEI AESPSQSNIP NTNTRKNYPG DLKFQNLDGD
NVIFQGLNRV GNSGDKTIIG NSEPRYTYGV NLNSDWNGFF LGAFFQGVLK QNWYPSGEAR
FWGQYNRPYN AYPRWHQDNM FREELGNFDA YLPRLVGYTA QGTGRALQVA NDRFMQNVGY
IRLRNLQIGY TIPERITSKI HARDLKVYLS GENLWTWSPL YKWTRDTDVT SIIGSDRDLS
GGASGDGYNY PMLKSVSIGL SLNF
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