Gene Dfer_1548 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_1548 
Symbol 
ID8225119 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp1848832 
End bp1849539 
Gene Length708 bp 
Protein Length235 aa 
Translation table11 
GC content53% 
IMG OID644929406 
Productglycosyl transferase family 2 
Protein accessionYP_003085958 
Protein GI255035337 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0463] Glycosyltransferases involved in cell wall biogenesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.40436 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.932515 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTCAGA ATCCATTGAT CTCCATCATT TTGGTCACTT ACAATGCCGG CGCCACCTTG 
CAGAGGTGCC TCGACAGCAT TTACAGCCAG AAATACCCGC ATATAGAGGT GATCGTGATG
GATGGCCGCA GTACCGACGA TACGACCGCC ATCCTCCACC GGAACGACCA CAAGATCGCG
TTCTGGGAAA GTAAAAAGGA CGGGGGCATT TACGACGCCA TGAACAAGGC GCTCGGCCAT
GTGCGGGGCG AGTGGGTATA TTTTTTGGGT GCCGACGACG TGCTTACGCC CCAGTTTTCG
GATATGGCGC GGGAGCTGCG CGACCCGCAG GCCATTTATT ACGGCAGCGT GCTGAAAGCC
GGCAACAAAT ACCTGGGAAA AATGGCTCCC TACCAGCAAG CCAAAACCGG CATTAACCAC
CAGGCGATCA TTTACCCCGC CGAAATATTC TCCACACGCA GCTACGACAC GCGCTACCGC
ATTTCCGCCG ACCACGTGTT CAACATGCAG AGCCATTCCG ACGAGCGCTA TCATTTCACG
TTCGCCGATT TCGACATTGC CATTTTCAAC GACACCGGCG TGTCGTCCCT GCACAAAGAC
GCATTATTTG AAAAAGAGAA AGCCGGGCTC ATCCGAAAGC ATTTCGGAAT GGCGATTTAC
ATGCGGTTTT TGTTTAAAAA GCTGAAAGAG AGGCTATCGG GCCATTAA
 
Protein sequence
MRQNPLISII LVTYNAGATL QRCLDSIYSQ KYPHIEVIVM DGRSTDDTTA ILHRNDHKIA 
FWESKKDGGI YDAMNKALGH VRGEWVYFLG ADDVLTPQFS DMARELRDPQ AIYYGSVLKA
GNKYLGKMAP YQQAKTGINH QAIIYPAEIF STRSYDTRYR ISADHVFNMQ SHSDERYHFT
FADFDIAIFN DTGVSSLHKD ALFEKEKAGL IRKHFGMAIY MRFLFKKLKE RLSGH