Gene Dfer_1531 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_1531 
Symbol 
ID8225102 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp1829264 
End bp1831195 
Gene Length1932 bp 
Protein Length643 aa 
Translation table11 
GC content53% 
IMG OID644929389 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_003085941 
Protein GI255035320 
COG category[T] Signal transduction mechanisms 
COG ID[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.963114 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATATTTG CTGTTTCTCT TGCCGACTTT ATTACCCGCT ACCCATCCAT GCATTTGAAT 
TACGACCTGA TTTTCCGTAG CTGCTCCGAG GGAATCTTTG TGTTGGACGA AACAGGAAGA
ATCACCGCGT GCAATGCAGC CGCAAGCGCG ATTACAGGCT ACGATGACAC CGATCTTGAA
TGCAAGCCGT TTTTTACCAT CGGCGACGGC CAGGACGATC CGATCAAATA CCGCTACGAG
CTCGACCAGG CACTCAAAAA GAAATCGCTC GTTGTAGAAG GGTGGAAGTT GAAAAAAGAC
CAGACCCGTT ATTGGGCCGA GACTTCCTAT TCACCGTTAT TCGATGATTT TCAAAAACAT
GTGGGGTTTT GTGTGCTGAT GCGCGATATC ACGGAAAAAA AGCAGCACCA GTTCCAGCTG
CTCCAAAGCG AGGAACGCTA CCGGCTCATG GTGGAGGCTA TCCGCGACTA TTCTATTTTT
ATGCTCGACC CCGAAGGCCA TGTGATCACC TGGAACGACG GCGGCACTTT TGTGCATGGT
TACGCCGAAA GTGAGATTCT CAACAAGCAT TTTTCCGTAT TCTATTCCGC ATCCGATGTC
ATCGACGACA AGCCGCGAAA GGCATTGCAA ACAGCCAGCG AAAGTGGCTC GTACCGCGAG
GAAGGGTGGC GTGTGAAGAA GGATGGCTCG CTGTTTTGGG CAAATGTGGT GTTGACCGCG
CTCTACAACG ACCGCAACAA ATTGATCGGC TACTCCAAAG TTACCCGCGA CCTGACCGAC
CGGCTGAAAA GTGAGGACGT CCTACGGCAA AGTGAAGCCC GCTATCGTTC GCTCGTGGAA
CAAGTAGGCG ACTACGGCAT ATTCATGCTC GACATCCGGG GCCGGATCAT CAGCTGGAAC
GAAGGCGCCC GGCGGATCAA GGGTTACAGC GCCGACGATG TGATCGGAAA GTATTTCTCG
ATATTTTATC CCGAAGAGGA CATTCTGAAC GGAAAACCTG CCTGGGAACT GAAAGTGGCG
CGCGCTACCG GCAAATATGA AGAAGAAGGT TGGAGGCTGC GGAAGGACGG AAGCCGCTTT
TGGGCAAATA TCGTCATCAC GGCCGTGTAC GACACCGAGG GCAGGCTGAG CGGATTTTCC
AAAGTTACCC GCGACCTCAC CGAGCGGAAA ATGAATGAGC AGGCATTGCA GGAAAGCTCC
GACAGGTACA AGCAGCTCGT GGACGAGCTT TCGGTCACGA ACAGCGAACT GTCCTCCGTC
AACCGCGAGC TCGAACAGTT TACGGCCATT GTTTCCCATG ATTTGAAAGA ACCCGTGCGG
ACGGTCCGCA GCTTCCTGCA CCTGATGGAC CGGCATGTCG ACCAGCAAAA CTATGATAAC
CTGCGGCTGA GCATTGGCAA AGGTATCCTC GCCGCCCAGC GAATGCACGA TCTGATCGAT
AATCTGCTTC ATTACTCGCA GATCAGCAAG GTGGGGCTGC AACGGCAGAA GCTGAGAGTG
GAAGAAGTGA TCGGGGAGGC GATCCAGAAC CTCGACGACG CCGTTGCGCA ATCGGGCGCG
AAAATACAGG TCGAGAGCCT CGTGCCATTC ATTTATGGCG ACCGTGTGCA GTTGGTGCAG
CTTTTCCAGA ACCTGGTCGC GAATGCATTG AAATTCACCA ACGGCAGCAC GCCGGAGGTG
ACCGTGAAAT CCTGGATGGA GAATGGAAGC GTGCGGTTTG TGGTGTCGGA CAATGGCATC
GGCATTTCAC CTGAAAACCT GGAAAAGATC TTCGAGATAT TCAGAAGGCT GCATTTTGCG
AACCAATATC CCGGCCACGG CGTCGGGCTG GCCGTTTGCA AGAAAGTGGT GGAGCGCCAC
AGAGGACGGA TCTGGGCCGA GTCGGCGCAG GGAAAAGGCG CCAGTTTCCA TATTTTGTTA
CCCAAGATTT AA
 
Protein sequence
MIFAVSLADF ITRYPSMHLN YDLIFRSCSE GIFVLDETGR ITACNAAASA ITGYDDTDLE 
CKPFFTIGDG QDDPIKYRYE LDQALKKKSL VVEGWKLKKD QTRYWAETSY SPLFDDFQKH
VGFCVLMRDI TEKKQHQFQL LQSEERYRLM VEAIRDYSIF MLDPEGHVIT WNDGGTFVHG
YAESEILNKH FSVFYSASDV IDDKPRKALQ TASESGSYRE EGWRVKKDGS LFWANVVLTA
LYNDRNKLIG YSKVTRDLTD RLKSEDVLRQ SEARYRSLVE QVGDYGIFML DIRGRIISWN
EGARRIKGYS ADDVIGKYFS IFYPEEDILN GKPAWELKVA RATGKYEEEG WRLRKDGSRF
WANIVITAVY DTEGRLSGFS KVTRDLTERK MNEQALQESS DRYKQLVDEL SVTNSELSSV
NRELEQFTAI VSHDLKEPVR TVRSFLHLMD RHVDQQNYDN LRLSIGKGIL AAQRMHDLID
NLLHYSQISK VGLQRQKLRV EEVIGEAIQN LDDAVAQSGA KIQVESLVPF IYGDRVQLVQ
LFQNLVANAL KFTNGSTPEV TVKSWMENGS VRFVVSDNGI GISPENLEKI FEIFRRLHFA
NQYPGHGVGL AVCKKVVERH RGRIWAESAQ GKGASFHILL PKI