| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1529 |
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| Symbol | |
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| ID | 8225100 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 1827514 |
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| End bp | 1828842 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 644929387 |
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| Product | glycoside hydrolase family 28 |
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| Protein accession | YP_003085939 |
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| Protein GI | 255035318 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5434] Endopolygalacturonase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.604094 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAT ACACCCTGCT CGTTTCCTTG TTTTGCTGTG TCGCGCTTTC TGCCATTGCC
CAGGGCACGA GATCTGCCAA CTTCCCCGAC GGCACCCAAA TACCCGACTG GTTTTCAGAC
ACTTCCAAAA TTCAGCTAAG CAAACTCGGC AAGCAGTATG TGCTTACGGA GCATGGCGTG
GGGGCGGATA GCAACGTCGT TCAGACGGCC CGGATACAGC AGGTCATTGA TCGGGCGCAT
TCCCAGGGAG GCGGGGTGAT CGTCGTGCCG AAGGGTGTTT TTTTGAGCGG GGCTTTGTTT
TTTAAACCCA AAACACACCT TTACCTGGCC GATGGCGCCG TATTGAAGGG GTCTGATCAA
ATAGCGGATT ACCCGATGAT GCCTTCGCGG ATGGAAGGGC AAAACCTGGA TTATTTTCCG
GCGCTGGTGA ATGCTTATGG CGTGAATGGT TTTACCATTT CGGGAAAAGG GACCATCGAC
GGTAACGGGC TGAACTACTG GAAGGCTTTC TGGCAGCGGC GGAAGGAAAA TCCCAATTGC
ACCAACCTGG AAGTATCGCG ACCGCGACTC GTTTTCATCT GGAAAAGTAA CGATGTGCAG
GTACAGGATG TAAAGCTCCG GAACTCCGGG TTCTGGACGA GCCATTATTA CCAATGCAAT
AATATCAAAA TCCTCAATGT GACGATCACA GCTCCCCACG AGCCGATCAA GGCGCCCAGC
ACGGATGCCA TTGACCTGGA TGTGTGCAAC AATGTCCTCG TGAAGGGTTG CTACCTCGCC
GTAAACGATG ACGCCATTGC ATTGAAAGGC GGAAAAGGCC CCTACGCCGA CAAAGATCCC
GGCAACGGCG CGAATACCAA CATCATCATC GAGGATACGA ATTTCGGGTT TTGCCACGCC
GCGCTCACAC TTGGCAGCGA GGCCATTCAC AACAAAAACG TGATCATGCG CAACTGCCAC
ATCGAGAATG CCATGCGCGT GCTCTGGCTG AAAATGCGCC CCGATACACC CCAAAAATAC
GAGTTTGTAA GTGTGGAAAA CGTGGATGGT TACGCATACA GCCTCATTTA CGTAAAGCCT
TGGAAACAAT TCTTCGATTT GAAAGGAAGA ACAGACGTGC CGCTCTCCTA TTCCGACCAC
ATCAGTTTGA AAAACATTAA ACTGAAATGC GAGGTGTTTT TCGATGTGAG CCCGGGCGAT
TACGACAAAC TATCCAGATT CCACTTCGAA AACCTGGATA TTACCGCCAA AAACGTGGCA
TACGACAAAT CCGTAGTGCG CGACTTTACG CTCACGAATG TAAAGGTGAA CGATAAGCTG
ATCCGGTGA
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| Protein sequence | MKKYTLLVSL FCCVALSAIA QGTRSANFPD GTQIPDWFSD TSKIQLSKLG KQYVLTEHGV
GADSNVVQTA RIQQVIDRAH SQGGGVIVVP KGVFLSGALF FKPKTHLYLA DGAVLKGSDQ
IADYPMMPSR MEGQNLDYFP ALVNAYGVNG FTISGKGTID GNGLNYWKAF WQRRKENPNC
TNLEVSRPRL VFIWKSNDVQ VQDVKLRNSG FWTSHYYQCN NIKILNVTIT APHEPIKAPS
TDAIDLDVCN NVLVKGCYLA VNDDAIALKG GKGPYADKDP GNGANTNIII EDTNFGFCHA
ALTLGSEAIH NKNVIMRNCH IENAMRVLWL KMRPDTPQKY EFVSVENVDG YAYSLIYVKP
WKQFFDLKGR TDVPLSYSDH ISLKNIKLKC EVFFDVSPGD YDKLSRFHFE NLDITAKNVA
YDKSVVRDFT LTNVKVNDKL IR
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