| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1488 |
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| Symbol | |
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| ID | 8225059 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 1768995 |
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| End bp | 1772165 |
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| Gene Length | 3171 bp |
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| Protein Length | 1056 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644929347 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_003085899 |
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| Protein GI | 255035278 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.376333 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAA CTTTTCACAA CGACCCCGAA CGCGCCAGGC CGGCTCTCCG GACGGGCATG
CGCAAGGCCG GTCGGCCAAC CCTCCGGGGA GTATTGCAGG CCGTTTGCTG GTCGCTTTGC
TTCGCGCTCA TTACACTCCC GGCATTTGCA CAAAACACAT TTACGGTAAA AGGTACCGTC
ACCGCCGAAA ACGGTGAAGG CCTGCCGGGC GCGAGTGTGA TCCTGAAAGG TACTACCACC
GGCACCACAA CTGATGTGGA CGGCAAGTAT TCCCTCAGCC TGCCCGATGG CAATGGCACG
CTGGTGGTCA CTTACATTGG CTATGTCAAC CAGGAAATCG TGCTGGGTAA CCGCACGCAG
CTCGATGTGA AACTCGCGAC AAACGACAAA ACACTGGACG AAATCGTGGT GGTCGGTTAT
GGAACGCAGA AAAAGGCGAC ATTGACCGGC TCGGTTTCGG AAGTAAAAGG GGCCGATATG
GTAAAAAGCC CTCAGCCGAA CTTGTCCAAC TCGCTGGCAG GCCGGTTCTC CGGTTTTGTA
GCCAACAACC GCGGCGGCGA GCCTGGTTAC GATGGTTCGA GCTACACCGT GCGCGGTTTT
GCGACCACCG GCAATAACGA CGTGCTGATC GTCGTAGACG GTATCCCCGG CCAGGTAGGC
GGCCTCGATC GCCTCGATCC GAACGACATC GAAAGCGTAT CCATTCTGAA AGACGCTTCG
GCGGCGGTTT ACGGAAGCCG GGCGGCCAAC GGGGTAATCC TTGTAACTAC CAAGCGCGGA
ACTACCGGCA AACCGGTTAT TTCTTACAGC TTCAACCAGG GATTTTCGTC GCCGACACGC
CTGCCGAAGC TTGCCGACGC AGGTACTTAC GCGACGATCA TGAACGAAAT CGACTATTAT
AACAATCCGT CGGGCGGAAT GAACCAGCAT TACACGGCCG AGGAAATCGA GAAGTTCCGC
AACGGTTCCG ACCCATTGAA CTACCCTAAC ACCGACTGGC AAAAGGAAAC TCTCAAAAAG
TTTGCGCTGC AAAACCAGCA CAGCCTGGCC ATCAATGGCG GAACCGACAA TGTGAAATAC
TACGTGTCGC TGGGGACGAT TTACCAGGAT GCATTGTACA AAAATGCCGC TACGAAATAC
AAGCAGTACA ATTTCCGCTC TAACATTGAT GCCAATGTGA CGAAGGATTT CAAGGTGAGC
CTTGGACTTT CGGGCCGCCA GGAAAACCGT ACATTCCCGA TTTCTTCCGC GGGTAACACG
TTCCGCTCGA TCTACCGGGC TTATCCGACG GTAATTTCGC AGTATCCGAA CGGCTTCTAC
TCCACCGGCG TGGAAAATCA GAACCCGGTT GTGCTCGGCA CGGACATGGG CGGAACGGTG
AATAACCCGA CGTCCGTTTT TAACGGAATT TTGCGTGCGA GCTACAACAT GCCGTTTTTG
GACGGTCTGT CGGTGGATGG TTTTTATTCG GTGGACAAAT CGTTCAACTT CTCGAAGTCG
TTCAGCATCC CTTACACGCT TTATAACTAC AACCAAACCA CGGGTGCTTA CACGGGTGTG
GTTACAGGCG GTTCGGCCGG AGCGGCGTCC ATCGACCAGT CGCAGGTGAA CATCACCAAC
ATCACGCAAA ACCTTCGTTT GAACTACCTC AAAACGTTTG GCAAGCACAA TATCAATGCA
TTTGTGGCCT ACGAGCAAAA CAAGCGCCAT GAGGCGAAGT TCGGTGCGAC GCGTATCAAC
TTCCCTACGG CCTCCACGCC GGAACTTTCG CAGGGAGGCG CGGCGGCAAC CGACAAAAAC
AACTCGGGTA GCAGCTTCAA CTTTACCCGC CGGAGCTACA TTGGCCGCAT TGCCTACGAT
TTCGATGAGA AATACCTGGC CGAAGTGCAG GCACGTGTGG ACGGCTCGTC GATTTTCCCG
AAAGGCAAGC AATATGGTTT CTTCCCGTCG GTTTCGGCAG GTTACCGTAT TTCGCAGGAG
GATTGGTTCA AAAATAGCGT CCGTTTTATC GACGACCTGA AATTCCGCGC TTCTTACGGT
ACATTGGGTA ACGACAATGT GGGGCAATTC CAGTTCTACA ACAACTACTC GTTCGTGAAC
CAGTATGTGC TGGGCAATAA TGTGATCTCG CCCGGTATCG ACCTCACGAA GCTCGCCAAC
CCGAACATTA CCTGGGAAAC TTCCCGGAAG CTGGATATCG GTTTGAATGC GATTTTCCTG
AAAAACTTCA ACATTGAAGT GATCTATTTC AAACAGAAAA GATCAGACAT TCTTGCTGCC
AGAAACGCTT CTATTCCAAA CACTTCGGGG ATTGTAAACC CGCACAAAAC CAACGACAAC
ACGCCGCTCG TGCCGGATGA GAACCTTGGG AAAGTGAACA ACAGCGGTAT GGAAGCGACA
TTGGGCTACA ACCACAACGG ACGGTTCCGC TACAACATTT CGGGTAATGT TACTTATGCC
AAAAGCAAGG TGATTTTCAT CGACGAGGCT CCGGGTGCGC TTGATTATCA GCGCGAAACA
GGCGGTCCGC TTTACACGAA ACTGCTTTAT AACACCCTCG GCATTTTCCG CACCCAGGCC
GACCTCGACG CTTACCCGCA CCTGCAAGGC GCACAGCCGG GCGACCTTAT CCTGGAAGAT
TACAACAAAG ACGGCAAAAT CACCGCCGAC GACCAGGTAC GCAGCAAGTA CGGCAATGTG
CCGTTGCTGA CCTACGGCCT TACTTTCAAT GCGGGTTACG ATGCATTCGA CATTGCCCTC
GTGTTTGCAG GCCAGGGAAT GGTAAGCCAG TATGTATTGC CTGAGTCAGG CCAGGTAGGG
AACTTTTACA GCAGCTGGGC CGACAACCGT TGGAGCCCGA GCAATCCGGA CGGCTCTTTC
CCGCGGGTGG ATACACGTGC TTCGTCGTCG ATCAACGGCG GTTTGTATGC CAACAATTTC
TGGCTGAACA ACTCTTCGTT CGTGCGCCTC AAAAACGTGG AGCTGGGTTA CACGCTGCCG
AAAGACGCAT TGGCGAAGCT GAAAATATCG TCGCTGCGTA TTTATGCGAG CGCATTCAAC
CTGTTCACCA TCACGGGCGT GAAGGACTAT GACCCGGAAG GAAATAACGA GAGCGGCCAG
TTCTATCCGC AGCAGCGCAT CATGAACCTG GGCCTCAATA TCAAATTCTA A
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| Protein sequence | MKKTFHNDPE RARPALRTGM RKAGRPTLRG VLQAVCWSLC FALITLPAFA QNTFTVKGTV
TAENGEGLPG ASVILKGTTT GTTTDVDGKY SLSLPDGNGT LVVTYIGYVN QEIVLGNRTQ
LDVKLATNDK TLDEIVVVGY GTQKKATLTG SVSEVKGADM VKSPQPNLSN SLAGRFSGFV
ANNRGGEPGY DGSSYTVRGF ATTGNNDVLI VVDGIPGQVG GLDRLDPNDI ESVSILKDAS
AAVYGSRAAN GVILVTTKRG TTGKPVISYS FNQGFSSPTR LPKLADAGTY ATIMNEIDYY
NNPSGGMNQH YTAEEIEKFR NGSDPLNYPN TDWQKETLKK FALQNQHSLA INGGTDNVKY
YVSLGTIYQD ALYKNAATKY KQYNFRSNID ANVTKDFKVS LGLSGRQENR TFPISSAGNT
FRSIYRAYPT VISQYPNGFY STGVENQNPV VLGTDMGGTV NNPTSVFNGI LRASYNMPFL
DGLSVDGFYS VDKSFNFSKS FSIPYTLYNY NQTTGAYTGV VTGGSAGAAS IDQSQVNITN
ITQNLRLNYL KTFGKHNINA FVAYEQNKRH EAKFGATRIN FPTASTPELS QGGAAATDKN
NSGSSFNFTR RSYIGRIAYD FDEKYLAEVQ ARVDGSSIFP KGKQYGFFPS VSAGYRISQE
DWFKNSVRFI DDLKFRASYG TLGNDNVGQF QFYNNYSFVN QYVLGNNVIS PGIDLTKLAN
PNITWETSRK LDIGLNAIFL KNFNIEVIYF KQKRSDILAA RNASIPNTSG IVNPHKTNDN
TPLVPDENLG KVNNSGMEAT LGYNHNGRFR YNISGNVTYA KSKVIFIDEA PGALDYQRET
GGPLYTKLLY NTLGIFRTQA DLDAYPHLQG AQPGDLILED YNKDGKITAD DQVRSKYGNV
PLLTYGLTFN AGYDAFDIAL VFAGQGMVSQ YVLPESGQVG NFYSSWADNR WSPSNPDGSF
PRVDTRASSS INGGLYANNF WLNNSSFVRL KNVELGYTLP KDALAKLKIS SLRIYASAFN
LFTITGVKDY DPEGNNESGQ FYPQQRIMNL GLNIKF
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