Gene Dfer_1486 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_1486 
Symbol 
ID8225057 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp1765667 
End bp1767301 
Gene Length1635 bp 
Protein Length544 aa 
Translation table11 
GC content58% 
IMG OID644929345 
Productglycoside hydrolase family 30 
Protein accessionYP_003085897 
Protein GI255035276 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG5520] O-Glycosyl hydrolase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.291924 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAATTT CCGCTCCCGG TGCCTCTGTC GCCGGGAGTT CTTTTTTCTT CCATTCCCTG 
ACAGACCTGT TCATGCAAAT TTCCCAACAC CTCGGAACGC TGTTCCTCGG GCTCCTCATG
ACGTCGTCCA TGAGCTGCCA AGGCGCCGAA TCCGCCACCA AACCCGTTGA CCCGGTTCAG
GAGACGGTCA CGATCCGCAT TGATCCATCC AAAACTTACC AGACCATCCG CCATTTCGGC
GGTTCCGACG CCTGGGCCTG CCAGTTTGTA GGTAAATGGC CCCTGGCGAA GAAGAATGCC
ATTGCCGACC TCCTCTTCAG TAAAGACACG CACAGCGACG GCCGTCCGAA AGGCATCGGC
TTGTCGCTGT GGCGTTTCAA CGCGGGCGGC GGCACAGCCG AGCAGGGCGA TGCCAGCGGT
ATCCGGGACG AATGGCGCCG CGCCGAGTCG TTTTTTGCTG CTGATGGCGG CTACGACTGG
AACAAGCAGG AGGGCCAGAT GTGGTTCCTC CAAGCCGCCA AAGAACGCGG TGTGAATGAG
TTCCTGGTTT TCCCGAACTC CCCGCCCGTG CAATTTACCA CCAATGGAAA AGGCTATGCT
ACCAATGGTC AGCCGAACCT GCCCGCACAG CAATACGATA AGTTCGCCGG TTACCTGGCC
GATGTGATCG ACGGCGTGCG CCGGAAAACG GGCATTACAT TTCAATACGT CAGCCCTGTG
AACGAGCCGC AATGGGATTG GAGCGACGGA GGGCAGGAGG GAACACCTTA TTTCAACAAC
CAGATCGCCG CCATTACCCG CTCGCTCAGC GCGGCGCTTT TGAAGAAGAA CCTGGCTACC
AAAATCAACA TCGCGGAGGC GGGGCAGATC GACTACCTGT ATTCCGAGCA TAACCGGCCC
GGACGCGCCA GCCAGGTCAC TGCGTTTTTT GACAAAAACA GCCCCGACTA CGTCTGTAAC
CTGCCCAATG TGCTTCCGGC CATTTCGGGG CACAGCTATT TCACCACTTC TCCCTACAAA
GCCGCTGCCG AGAAACGCCG GCAGCTGGCC GCCGCGGTTG CCAAAGTTCC CGGCCTAGAA
TACTGGCAGT CGGAGTATTG CATTCTGGGT GATAATGAGG GGGAAATTAA GGGAGAGGGG
CGTGACCTGG GCATCAATGC CGGGCTGTAC ATGGCGCGCG TGATCCACAA CGACCTTGTG
AATGCGCAGG CAGCGGCATG GCATTGGTGG ATTTCTGTAT CGCCGTACGA CTACAAGGAC
GGCCTGGTTT ACATTGATAA AAATAAAAAC GACGGCAGCT TTCAGTCCTC CAAAATGCTT
TGGGCACTGG GCAATTTCAG CCGTTTCGTA CGCCCGGGTG CGGTGCGTGT GGATGTTTCG
GGTGGCCTGG GCACGGACGC GATGGTCGTT TCTTCCTACC TGAACACCGA TAAGTCGCTG
GTGACGGTGA TCGTGAATGC CGACAACCAG GACCGTGACA TCAGCCTTGC GATCAGCGGC
GGGCAGCCGG CCGGTGCGGT AAGCGTTTAC GAGACATCGG CCGAGCATGA CCTCGCCCCG
GTTCGGAATG CCGGTGCCGA CGGGCGCCTG GCTGTGAAGA AGCAAAGCAT TGTCACCATT
ATCAGGCAAT TGTAA
 
Protein sequence
MQISAPGASV AGSSFFFHSL TDLFMQISQH LGTLFLGLLM TSSMSCQGAE SATKPVDPVQ 
ETVTIRIDPS KTYQTIRHFG GSDAWACQFV GKWPLAKKNA IADLLFSKDT HSDGRPKGIG
LSLWRFNAGG GTAEQGDASG IRDEWRRAES FFAADGGYDW NKQEGQMWFL QAAKERGVNE
FLVFPNSPPV QFTTNGKGYA TNGQPNLPAQ QYDKFAGYLA DVIDGVRRKT GITFQYVSPV
NEPQWDWSDG GQEGTPYFNN QIAAITRSLS AALLKKNLAT KINIAEAGQI DYLYSEHNRP
GRASQVTAFF DKNSPDYVCN LPNVLPAISG HSYFTTSPYK AAAEKRRQLA AAVAKVPGLE
YWQSEYCILG DNEGEIKGEG RDLGINAGLY MARVIHNDLV NAQAAAWHWW ISVSPYDYKD
GLVYIDKNKN DGSFQSSKML WALGNFSRFV RPGAVRVDVS GGLGTDAMVV SSYLNTDKSL
VTVIVNADNQ DRDISLAISG GQPAGAVSVY ETSAEHDLAP VRNAGADGRL AVKKQSIVTI
IRQL