Gene Dfer_1484 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_1484 
Symbol 
ID8225055 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp1761289 
End bp1764045 
Gene Length2757 bp 
Protein Length918 aa 
Translation table11 
GC content58% 
IMG OID644929343 
ProductPKD domain containing protein 
Protein accessionYP_003085895 
Protein GI255035274 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2133] Glucose/sorbosone dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.287223 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGGACA CCGCTACCAA ACCCGACGAG AGCCGTTTCA CGCCGGTTGT CCTGGCCGAT 
AACCTGGACG AACCGATGGC ATTTGAAGTG CTGCCGGACG GTAGTTCGTA CATTATCGAG
CGGAAAGGTG CTTTGAAGAA ATACAACCCG TCCAGCCGGA CCACCGAGCT GATCACGACG
ATTCCCGTTA ATACCAAATA TGTGAACAAA GAGGGCGTTT CCCGGGAGGC CGAGGAGGGC
TTGATGGGCA TCACGCTCGA TCCCAACTTC GCGAAAAATC ACTGGATTTA CCTCTATTAT
GCGCATCCGA CGGAGAAAAA ACATGTCCTC GCACGCTGGG ACCTTGTGGA TGACCAACTG
GTGGAAAGTT CGAAAAAGGT AGTGCTCGAA GTAACCACCC AGCGCGAAGT GTGCTGCCAT
ACGGGCGGCG GGATGACCTG GGACAAAAAC GGAAACCTGT TTCTGACGGT CGGTAACAAC
ACCGGCAACG ACAAGGCCGC GCAAACCGAC GAGCGCCCCG GCCGCGAGAG CTGGGACGAC
CAGGGCCACG CGGGCAATAC CAATGATTTG CGGGGCAAAA TCCTTCGCAT TCATCCCGAA
CCCGACGGTA CCTACACCAT TCCGGATGGC AACCTTTATC CCAAAGGCAC CGCGAAAACC
CGCCCCGAAA TTTATTCGAT GGGCCACCGC AACCCATGGC GCATTGCGGT GGATAGCAAA
ACAGGCTTTG TGTACTGGGG CGAAGTAGGA CCGGATGCGA ACGAGGATTC GGAAATTGGC
CCGAGAGGCT ACGACGAGCT GAACCAGGCG CGCAAGCCCG GCAACTTCGG CTGGCCGTGG
TTTGTGGGCA ACGACCAGGC ATTTCCCGTG TTCGACTACG CCGCAAACAA GCCGGGCGCA
AAAAAAGACC CCAAAAACCT CGTGAACACA TCGCCGAACA ACACCGGCCT GAAAGAGCTG
TTTCCCACTG CCCCGAGCTT CATATATTAT CCTTACGGCG TTTCCGAGCA GTTTCCGCAA
GTGGGTTCAG GCTCGCGCAG CGCCACGGGC GGGCCTGTCT ACCACCGCTC CGATTTCAAA
AATCCGAAAC GTCCCTGGCC GGCCTATTAT GAAAACAAAT GGATCGCCGC CGACTTCTCG
CGGGGCTGGA TCATGGCCAT CAGCATGAAT GCGCAAGGCG ATTACGAATC CATGGAGCGG
GTGCTGCCGG CTTACCACCC GGTACAGCCG ATCGATATCA AATTCGGGCC GGATGGCGAT
TTGTACATTC TCGAATACGG AAGCAACTGG TTCCGGAAAA GCGACAACTC GCGCCTGGTG
CGCATTGAAT ACAACGGCGG CAACCGCAAG CCGATCGTCG CCGCCAATGC CGAAAAGAAG
GGCGGGACAG TGCCGTTTGA AACGGTTTTG TCGTCAAAAG GCACCAAAGA TTTCGATAAC
GATGCCCTGA AATACAGCTG GAAAGTGACG AGCCCAGGTG TGGCGCCAAA GACATTTACC
ACTGAAAACC CGGTCGTGAA ATTCGATAAG GCCGGCGTGT ACACGGCCAC GCTCACTGTA
ACCGACACCA AAGGCGCCAG TAACAGCCAG TCGGTGCGCA TCATTGCCGG CAACGAACCG
CCGAAAGTGG CGATCAGGCT GGACGGGAAC AACACGTTTT TCTTCCCGAA CAAGGTCATA
GGCTACTCCG TGGGTATTTC CGACAAGGAA GACGGCAGCA CAGCCGACGG CAGCATTAAC
CCCGGCCAGG TGGCCGTTAG CATCGACTAC ACCGCGGAAG GTTTCGACTA TGCCGAAGTT
GCCCAGAGCC AGCGTAGTGT GGATGCCACC ACGCAATTTG CCGTTGCGCA GACATTAATG
AGCAAAAGCG ACTGCAAAGT ATGCCACCAG CCGGATACGA AGTCGGTAGG GCCGTCGTTC
GCCGATGTTT CTAACAAATA CAAAAGCGAC CCCGGCGCAT TGGACCGGCT CGTGAAAAAG
GTGCTCGAAG GCGGCTCGGG TGTTTGGGGG GAAGTGGCAA TGGCCGCACA TCCGGCGCTG
CCCGTGGCCG ACGCCGAGGT GATTGTCCGG TATATGCTCA ACAGCACCGC TAAAACGCTC
TCGACGCTCC CGCTCGAAGG CCGGTACACA CCGCGCATTC CCAGGACCGA CAACGGCAAA
GGCTCGGTGA TCATCCGGGC CGCATACACC GACCGCCCCG TGGGGACTAC CAAAGCGGTG
CCGGCCCAAA CTACCGAGGA AACGATCGTG CTCCGCAGCC CGGAACTGAA TGCAGCCGAG
GCACCTGTGA CGAAAGGTGT GGAAACAAAG GCATTGGGCG TGGCGGGACT GGGTTTCAGC
GTAGTAGCAT TTGAAAACAG CTACATTGCA TTCCCTGGCA TTGATCTCAC GGGCATCGAC
ACCCTGGAAC TGAACGCCGC CGCGCAACAG CGCGAAGGCA GCGTGGGCGG CACGATCGAG
GTGCGGCTTG GCTCGCCCAC CGGCGCCCTG ATCGGCCAGC ATAACCTCAC GGTTGCGAAG
CCGGTGGATA TGACCAAAAT GATGGCTGAG CTGGAAAGTG GAGCCAAAAA AGAAGGCACG
CAGCCCGCCA AACCGGCACC TGCCCCGCGC AGCCGCTTCG CACAGCCGCC CGTTCGCATC
GCGCTGCAAC CCACCGCGGG CAAGCAGGAT ATCTATTTCG TATTCCGCAA TGCGGAGGCC
AAGCCGATCG AACCGCTGAT GTCCTTTTCT AAAATCAGGT TTAAGACAAG GCCTTGA
 
Protein sequence
MQDTATKPDE SRFTPVVLAD NLDEPMAFEV LPDGSSYIIE RKGALKKYNP SSRTTELITT 
IPVNTKYVNK EGVSREAEEG LMGITLDPNF AKNHWIYLYY AHPTEKKHVL ARWDLVDDQL
VESSKKVVLE VTTQREVCCH TGGGMTWDKN GNLFLTVGNN TGNDKAAQTD ERPGRESWDD
QGHAGNTNDL RGKILRIHPE PDGTYTIPDG NLYPKGTAKT RPEIYSMGHR NPWRIAVDSK
TGFVYWGEVG PDANEDSEIG PRGYDELNQA RKPGNFGWPW FVGNDQAFPV FDYAANKPGA
KKDPKNLVNT SPNNTGLKEL FPTAPSFIYY PYGVSEQFPQ VGSGSRSATG GPVYHRSDFK
NPKRPWPAYY ENKWIAADFS RGWIMAISMN AQGDYESMER VLPAYHPVQP IDIKFGPDGD
LYILEYGSNW FRKSDNSRLV RIEYNGGNRK PIVAANAEKK GGTVPFETVL SSKGTKDFDN
DALKYSWKVT SPGVAPKTFT TENPVVKFDK AGVYTATLTV TDTKGASNSQ SVRIIAGNEP
PKVAIRLDGN NTFFFPNKVI GYSVGISDKE DGSTADGSIN PGQVAVSIDY TAEGFDYAEV
AQSQRSVDAT TQFAVAQTLM SKSDCKVCHQ PDTKSVGPSF ADVSNKYKSD PGALDRLVKK
VLEGGSGVWG EVAMAAHPAL PVADAEVIVR YMLNSTAKTL STLPLEGRYT PRIPRTDNGK
GSVIIRAAYT DRPVGTTKAV PAQTTEETIV LRSPELNAAE APVTKGVETK ALGVAGLGFS
VVAFENSYIA FPGIDLTGID TLELNAAAQQ REGSVGGTIE VRLGSPTGAL IGQHNLTVAK
PVDMTKMMAE LESGAKKEGT QPAKPAPAPR SRFAQPPVRI ALQPTAGKQD IYFVFRNAEA
KPIEPLMSFS KIRFKTRP